| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A1111 |
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| Symbol | |
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| ID | 3833418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 1306656 |
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| End bp | 1307687 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637825200 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_426199 |
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| Protein GI | 83592447 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.522532 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAGCA GCGACGACAG CAACGACCTG GACGACGGCT TCGATGACGA GGCAGCCGCC
GCGCCGATCG TTTACGAGCG CGCCGTCGAC GCCGAGGCCG CCGGACAACG CCTGGATAAA
TGGCTGGCCA CGGTCATCCC CACCCTCTCG CGCGCCCGCT TGCAGCAGTT GATCGGCGAA
AAGCGGGTCA GCGTGAATGG CCAGACCATA GGCGAAGGGT CGCGCCGGGT CAAACCGGGT
CAGACCGTCC GCGTTGAAGA GCCGCCGCCG ATCGCCGCCA CCCCCCAGCC CGAAGCCATC
GCCCTCACCG TGGTGTATGA GGACGATGAT CTGATTGTTA TCGACAAGGC GGCGGGCATG
GTCGTCCATC CCGGGCCGGG CAATCCCGAT CACACCCTGG TCAACGCCCT GCTCGCCCAT
TGCGGCCCGT CGCTTTCGGG CATCGGCGGC GAGCGGCGGC CGGGCATCGT CCATCGCCTG
GACAAGGATA CCAGCGGCCT GATGATCGCG GCCAAGACCG ACCTCGCCCA CCACGGGCTG
GCCGAACAAT TCGCCTGCCA TTCGCTGACC CGGGAATATC TGTGTCTGGT CTGGGGACGC
CCGCGACCGG CGGCCGGCAG CATCGACGCC CCTTTGGGGC GCCATCCGAC CCAGCGCAAG
AAAATGGCGG TGGTCAGTCG CGGCGGAAAG CGCGCCTTGA CCCATTATCG GGTGGTTGGC
GATGTCGAAG GAATCGCCTC GATAGTGAAG TGCACGTTGT CGACCGGGCG GACCCATCAA
GTGCGCGTGC ATATGGCCCA TATCGGCCAC CCGCTTCTCG GTGACGCGGT TTATGGACAT
AGAAATATTC CAAAGAAACT CCCGGGTGAT TTATCCGAGA GGATCGCGCG ACTGACGCGA
CAGGCCTTAC ATTCGTTTCA TTTAGGGTTT TTGCATCCCC GCACCGGAGA ATCCCTCGAA
TTTTTGTCAG AATTGCCCTT GGATATCAGT GCCGTAGCGT CAATTTCGAG TCGAAACGCA
ATCAAACTCT AA
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| Protein sequence | MASSDDSNDL DDGFDDEAAA APIVYERAVD AEAAGQRLDK WLATVIPTLS RARLQQLIGE
KRVSVNGQTI GEGSRRVKPG QTVRVEEPPP IAATPQPEAI ALTVVYEDDD LIVIDKAAGM
VVHPGPGNPD HTLVNALLAH CGPSLSGIGG ERRPGIVHRL DKDTSGLMIA AKTDLAHHGL
AEQFACHSLT REYLCLVWGR PRPAAGSIDA PLGRHPTQRK KMAVVSRGGK RALTHYRVVG
DVEGIASIVK CTLSTGRTHQ VRVHMAHIGH PLLGDAVYGH RNIPKKLPGD LSERIARLTR
QALHSFHLGF LHPRTGESLE FLSELPLDIS AVASISSRNA IKL
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