| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1937 |
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| Symbol | |
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| ID | 3761131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 2123142 |
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| End bp | 2125469 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637786680 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_392201 |
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| Protein GI | 78486276 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTTCA AGCGCGGATT GATTGGGATT GTATGGCTTT GTATGGGGTG GAGCATTTTT
TTATCAAATG CCGCTTATGC AGATCACCCA TCCAAACTCA ATGAAAGCGC GTTGGAAAAA
GTAACGCTAC AATTAAAGTG GCATCATCAA TTTCAATTTG CTGGCTATTA CGCTGCGCAA
AAAGAAGGCT ATTATCAAGC CGAAGGGCTG GATGTTGATA TTCAACCTCG TGACCTTCAT
GAAAATAACA TTCAACAAGT AATCGACAAC AAAGCTCAAT ACGGCGTTGC CGATTCCATC
TTGTTGTTGT ATCAAGCTAA AAAAGCACCA CTGGTCATTG TAGCGCCGAT ATTTCAACAT
TCTCCCCAAG TTTTGTTTAC GTTAGCCTCT TCAGGGATAG ACAGTCCCTA TAAACTTAAA
AATAAAAAAA TTGCCTTGTA CCAAAAAGAT ACCGACGGGT TTTCCGTGTT AGCTATGCTG
CACGAAGTTG GTGTTTCTCC GACCGTCGAA CGAACCATTA AATCAGATGC GAGCATGTTG
GTTCAAAACC AAGTGGATGC CTATGCCGGA TATTTGACCA ATGAAGCCTA TACATTCCAT
GAAAATAACA TTCCGATCAA TGTGATTAAT CCGTTGAACT ACGGTATTGA TTTGTATGGC
GATATGCTCT TTACCAGTCA AAAGGAAGTT TCCCAGCACC CTGAACGGGT TGAAAAAATG
CGACGAGCAA CATTGAAAGG GTGGCGATAT GCCATGGCGC ATAAAACGGA AATGGCGCAT
TATATTCAGT CGCACTATCA AATGAAAAAA AGCTTTAAGC ATTTAATGTA TGAAGCTAAT
GCCATTGAAA ACGTGATGTC ATTAAGTACC ACGCCTATTG GAACGCTGGA TGAAGGTCGA
TTGCAATTCA TTGCAAACCT GTTTCAGAAA CACGGTTTGA TCGATAACAA GGTTAATTTG
AAAAGTGGGG TTTATCGTTC TGGCCAAAAG GAGATTGAAT TTACAGCCGC AGAAAAAAAA
TGGTTGAACG AACATCCTGT GGTGAATTTA GCGATCGATC GTTTTTACGC GCCTGTTGAG
TTTGTCAATA ATCAAGGGCA GTATGCGGGG ATAGCGAAAG ATATTTTTCA GGTGATTGAG
CAGAAAACCG GCATTGAGTT CAAGCCTGCC ATGCATTTGA GATGGCCTGA AGCTGTTGAA
TCCATGAAAC AGAAAAAATT GGATGTGTTT TCAGCCGTTA TTGAAACGGA AGAAAGAAAA
GACTACGTGA ATTTCACAAT GCCTTATTTC AAACTGCCTA TGGCGATTGC GACACGTGAA
AGCGCGCCTT ATATTGCCGA TTCAAAGCAA TTAAGCGGTA AGGTGATTTG TGTGGTCAGG
GATTATGCCT CTCATGCAAA ATTAAAACGA TTTTATCCGA ACCTGCCTTT GTTATTGGTG
GATACCCCAA AAGAAGGTAT AGAAGCGGTT GCCAATGGAA AAGCGTATGG TTATGTGGAT
AATGTCGCAG TCATTGGGCA TCACATCAAA AACAGTGGGT TAGCTAATGT CAAAATATCG
GGTGAAATGC CGTTTAGAGC GGACATTGCC ATTGCGGTTC GGGATGATTG GCCCGAACTA
CACAGTATTA TTCAAAAGGT ATTGCAACAG ATTCCACCGG AAACCTACGC TGAGATTTCG
AATAAATGGT TACAAGTGAG CTACCAAAAA CAATATAACT GGCAACAAAT GACAATTGTT
TTAGCTCCTA TTTTGTTGTT ACTTGGTGTG TTTGCGTTCT TTAACCGTAA ACTAAGACAG
ACGCAAAAGA AACTACAAGA AACCAACAAG CAGCTTTCTA TTTTATCGGT GACGGATCAT
TTAACCGGTG TGTATAACCG TCAGTATTTA GACCAGCGTT TGGACAGTGA GGTTGAGCGA
GTCAATCGCT ATGGGTCAAC CTTTAGTGTC ATTATGATGG ATTTGGATAA TTTTAAAAAA
GTGAATGATA AATTTGGTCA TTTAGTGGGC GATGAAGTGC TAGTGGTGTT TGCGCAAACC
GTTGAGAAAG AGATTCGTAA AATCGATATT TTTGGTCGCT GGGGGGGAGA AGAGTTTATT
TTGATTTGCC CGGAAACGCC TTTGACGCAC GCGATTCAAT TGGGCAAGAA AGTAAGAAAA
TCCATTGAGA GTCAGGATTA TCCTGAAAAT ATTTCGCAAA CAGTGAGTTT AGGTGTGGCT
GAGTACCAGA CAGGTGAAGC GATAAATGAT TGTTTGAATC GAGCAGATCA AAATTTATAC
AAAGCCAAGC AACTTGGTCG AAACCAAGTT TGTCCGGGCC TTGACTAA
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| Protein sequence | MIFKRGLIGI VWLCMGWSIF LSNAAYADHP SKLNESALEK VTLQLKWHHQ FQFAGYYAAQ
KEGYYQAEGL DVDIQPRDLH ENNIQQVIDN KAQYGVADSI LLLYQAKKAP LVIVAPIFQH
SPQVLFTLAS SGIDSPYKLK NKKIALYQKD TDGFSVLAML HEVGVSPTVE RTIKSDASML
VQNQVDAYAG YLTNEAYTFH ENNIPINVIN PLNYGIDLYG DMLFTSQKEV SQHPERVEKM
RRATLKGWRY AMAHKTEMAH YIQSHYQMKK SFKHLMYEAN AIENVMSLST TPIGTLDEGR
LQFIANLFQK HGLIDNKVNL KSGVYRSGQK EIEFTAAEKK WLNEHPVVNL AIDRFYAPVE
FVNNQGQYAG IAKDIFQVIE QKTGIEFKPA MHLRWPEAVE SMKQKKLDVF SAVIETEERK
DYVNFTMPYF KLPMAIATRE SAPYIADSKQ LSGKVICVVR DYASHAKLKR FYPNLPLLLV
DTPKEGIEAV ANGKAYGYVD NVAVIGHHIK NSGLANVKIS GEMPFRADIA IAVRDDWPEL
HSIIQKVLQQ IPPETYAEIS NKWLQVSYQK QYNWQQMTIV LAPILLLLGV FAFFNRKLRQ
TQKKLQETNK QLSILSVTDH LTGVYNRQYL DQRLDSEVER VNRYGSTFSV IMMDLDNFKK
VNDKFGHLVG DEVLVVFAQT VEKEIRKIDI FGRWGGEEFI LICPETPLTH AIQLGKKVRK
SIESQDYPEN ISQTVSLGVA EYQTGEAIND CLNRADQNLY KAKQLGRNQV CPGLD
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