| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1454 |
|---|
| Symbol | |
|---|
| ID | 3760801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | - |
|---|
| Start bp | 1571184 |
|---|
| End bp | 1573622 |
|---|
| Gene Length | 2439 bp |
|---|
| Protein Length | 812 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637786185 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_391720 |
|---|
| Protein GI | 78485795 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2604] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTAT TAAATGCGCC CAAACAGAAT GCTTATGGCG AAGAATTTTA TGAAGAGTTA
AATGGTAAGA TCTTTACAAA CTCTTCGAGT AAGACGGTTT TTGAGCGTTA TTTTAAGGAT
TCATTCGATG TTGAGTATCA GTTAAATTTA ATTGTGGGAA CGGACTCTGG ATTGTTGCCT
AAATTTATTT ACGAAAAATA TCGAGACAAT AAAAAAGGTC GCGAGTTTGT TTTCTTTGAG
CAACCAGAAG TCATTGAAAA ATTCGATTTT AGTTATCTAC CTGATTGGAT CAGTGTTCAA
CCGGCGGGTG CTGATCTGAA AGAACTCAGC GCAAACTGGA TTGAATACAT GATGACAAAG
CGCATTGGGC TGTATAAATC CATTGCCGTT ATTGATGAAA TCTCGACCGA AATAAAATCA
CTTTGGGTTT TGATCAAAGA TCAATATTCT CGTCTTCAAT TCAGTGATTT AGCCAATAAC
CACACCAAAC CTTTTGTTGA AGCGCAGCTG AAAAACTTTC CAAGAAATAA TTTCCCTATT
CAACAAATTA AAAACCGTTT AAAAGGTCAA AAAGCCATTA TGATTGCTGG CGGTCCGTCT
CTTGATCAAT CGATAGAATG GATTAAAGAC GTACAGGATT CTTTTTTTAT CTTCGCCGTT
GGTCGCGTTT CCAAAAAACT GTATCAAGCT GGAGTGACAC CTGATTTCAT TATTTCAGTT
GATCCGCATG AATTGAGTTA TGACAACAGT AAGCAAATGT TTTACTTTTC TGAAGAAAGT
ATTTTGTTGA ACTGTTTTCA CATCGCGCCT CGGTTGTTAA GTCAATGGTC TGGTATCTCT
TGCTATTTTG GTGAACTCTA TCCTTGGGAA GAAGCCAGTG GAAATTCCAC ATCACCAGGC
CCAACGGTAC TTCACAGTGC GGTTGTTCAA GCCGCGTATT TAGGGTGTGA TGAAATTTAT
CTCACCGGTG TCGATTTATG TTTTTACAAT GGTCAGACAC ATGTTTCCGG TACTGCTGAA
TCTAATGTCG GTAAGCTCGG TATTAAGGAT TTGTCTAAAG TATTGACGTA CAGCGGAGAG
GAAGCCGAAA CAGACATTCC TTTTGCTCAA GGGGTTATCG CATTAGGGAG TATTGCGGCT
TACTTACAAG AAACGCGTGA AACGAAGTTG TTTAATTTAA GTCAAAACGC GGCAAAAGTT
GAAAACATTG CATATCGTTC ACCTGACGAT ATTTCTCTAC CCGAAGGTGG AAGTCAAGCA
AAGTACCCAG TTTTGGAACA GCTAAAACTT GAGATTAAGT TTTCATTGCC CGAAATGCAG
ACAATTCTTA AGAATAAGTT AAAAGAGATG CAGTCTGAAA GGGCTTTAAT TATTTCTGCA
CAGTCCATTC TGACCGATGC GATTAAAAGC ATAAAACAAT ATCAAAAAGA TTTTAATGCG
AAAGCGTTAG CTAAAGCTCA AAAACATCGC CTAAAGTTAG AAAAAAAACT GGAAGAGCAA
GCAATGATGC TCTTTTATTT TGGGTACAGT TATTTTTCTC AAGTAATGAA ACCGGTCGAG
GACAGTTCTA ATTTATCTGA CGATGAAATC GCACACACAT TATCGACTTA TTTTGATGGC
ATGAAAAAGT CGGTTAAAGA TTTCATTGTG TTGATTGATG CCGTCATTAC TGAAATCAAG
TTTATGCAGA AAGAGTTTGA TGATAATTCT TTACCTTGTG AACTGGAAAC GGTTTGGGAG
CAGCATAAAG AATTTGGGCG AGGAGAAGTT TGGACTCGTT ATCATGTAGG GACACCAGCT
GCAGAGCAGC AAGTTTGCCT AGACAGAATG CAAGAAAAGT TCTATGAAGA CATTTCTACT
GAGCATACTA AGCAAGCGCA AATGCTCCAA CGAAAAGCAT ATGGCGTGAC CAATTTGATT
GACAAAATTA AAGAGGCATT TGAATTGGGT AATATCCAAG AATTGAAAGC GCTAATGGAC
CCGGTACAAA CCCTTAAAAA TCCCATCGAT CAGTTAGGGT TGTCTAATTT TATTGAAGCG
TCAATTGCTG CGATAGAAGC CCCTGAATCC GCTATTGAGC TTTATGAGAA AAATGAACAT
CCTAAATTGC AGGTGTATAT AAAGAGTCAA TTGTTGCCGA CGTATATGAA AACAGAACAG
CATGATAAAG CGCTTAAAAC CCTACAGGAT TTATGTGAAC TGTCAGCAGA CTACATGATT
CCGTATGCAG ATTATTTGAA TATTTTAGGA AGGCCTGACC TGGCCACTGA AGTGGCTTTA
GAGCTCTTTA GACAAGAACA AACCAATTTA CCTGCATTAA TTAAAGTCGT CCACTATGCA
CATAAAGCAA GTTTAAATGA TGTGTTTTCA GACGCCCTGT CTGTCGCACT TTCGATGGAT
CCTTTTCATC CAGAATTGCA AAGTTACATA CAAAAATAA
|
|---|
| Protein sequence | MTVLNAPKQN AYGEEFYEEL NGKIFTNSSS KTVFERYFKD SFDVEYQLNL IVGTDSGLLP
KFIYEKYRDN KKGREFVFFE QPEVIEKFDF SYLPDWISVQ PAGADLKELS ANWIEYMMTK
RIGLYKSIAV IDEISTEIKS LWVLIKDQYS RLQFSDLANN HTKPFVEAQL KNFPRNNFPI
QQIKNRLKGQ KAIMIAGGPS LDQSIEWIKD VQDSFFIFAV GRVSKKLYQA GVTPDFIISV
DPHELSYDNS KQMFYFSEES ILLNCFHIAP RLLSQWSGIS CYFGELYPWE EASGNSTSPG
PTVLHSAVVQ AAYLGCDEIY LTGVDLCFYN GQTHVSGTAE SNVGKLGIKD LSKVLTYSGE
EAETDIPFAQ GVIALGSIAA YLQETRETKL FNLSQNAAKV ENIAYRSPDD ISLPEGGSQA
KYPVLEQLKL EIKFSLPEMQ TILKNKLKEM QSERALIISA QSILTDAIKS IKQYQKDFNA
KALAKAQKHR LKLEKKLEEQ AMMLFYFGYS YFSQVMKPVE DSSNLSDDEI AHTLSTYFDG
MKKSVKDFIV LIDAVITEIK FMQKEFDDNS LPCELETVWE QHKEFGRGEV WTRYHVGTPA
AEQQVCLDRM QEKFYEDIST EHTKQAQMLQ RKAYGVTNLI DKIKEAFELG NIQELKALMD
PVQTLKNPID QLGLSNFIEA SIAAIEAPES AIELYEKNEH PKLQVYIKSQ LLPTYMKTEQ
HDKALKTLQD LCELSADYMI PYADYLNILG RPDLATEVAL ELFRQEQTNL PALIKVVHYA
HKASLNDVFS DALSVALSMD PFHPELQSYI QK
|
|---|
| |