| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0225 |
|---|
| Symbol | |
|---|
| ID | 3761625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 266669 |
|---|
| End bp | 267805 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637784930 |
|---|
| Product | SoxH protein-like |
|---|
| Protein accession | YP_390495 |
|---|
| Protein GI | 78484570 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.986095 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGAGA AAAAGATGTC GTTTAGAAAA ATCATTGTAC TATTGAGTGG AGCGTTATTG
ATTACGCCCT TGCTCAGCCA GGCCAGCGCC AGTCAAAATC AAGACCCTTA TGTGGCGAGT
TTTGAAACCT ATGCCAAAGA AGTTGCGGCA CTTAATAAAC ATTCAGAGAC GAACCAGGCT
TTTCAAATGT ACGCACAGGA AGTGGCCAGC GTCGAAAAGG CGGTTGGCTA CATTGGTGAT
GAATTACCGA TTCCAAAAGC GACGAAGGTG ATGGATGGCG TCTATACCGT TGTGGGCAGT
TTTATTTGGG GAACACGCGC AAATTTTGGG TTGAACAATA ATTTATCCGC CATTATTTTT
AAGGATGGCG TGTTTGTGTA CAACGGTGGG CCAAATGAAG CGGTGGCCTT CAGCTTTCAC
CAACAGATTA AACGGCTGAC AGACAAACCT GTGAAATGGC TGGCGGTGGA AAACGACCAG
GGCCATGCGT ATTTTGGTGC CAGTTACTGG GCCGATGTCG GTGTCAAAAA TCTCTATTCC
CAAAAACGCG CCAATGAAAA CTGGCATCGA ATTTTCGAGC GTAATAAAGA ACGCTATTCT
GCCGCTAGAG GGCGAGCGAT TACGCAATCG GTGCACGATG TAACGCATCT TTTCACAACC
TTTCAAGATC GTAAGACGAT TGATGTGGGC GGCGGTGAAA CGGTGGAACT GATTAACTTT
GGAGGTGGCC ATACACCGAG TATGACCGGC ATGTACATCC CTTCGCGTCA TTTGCTCTTT
ACAGGCGATC TAGGCTTTAA TGAAAGACTT CCCGGGTTAT TGCATGACAG TCACTATAAA
GATTGGATTC GTTCTTTTGA GAAAATGATG GCGATGGTGC CAAAAGATGT CACTGTCATT
CCCGGGCACG GAACGCCAAC GAACATGGCC ACGATTAAAC GACAAACCTA TGATTACTTT
GTCGAGCTGA TTGCCGAAGT ACAAAAAGTG GTGGATCGCG GTGGCGACAT TGAAGAGGTG
GACGCCATTG ACCAATCCAA ACATAAAGAC CGTCCGGTAT TTGAACAACT GGCAAAAGAA
AATGCGCGCC ATATTTATCG TGAAATGATG GCGGAAAAAG CGAAGAGCTC TCCCTAA
|
|---|
| Protein sequence | MKEKKMSFRK IIVLLSGALL ITPLLSQASA SQNQDPYVAS FETYAKEVAA LNKHSETNQA
FQMYAQEVAS VEKAVGYIGD ELPIPKATKV MDGVYTVVGS FIWGTRANFG LNNNLSAIIF
KDGVFVYNGG PNEAVAFSFH QQIKRLTDKP VKWLAVENDQ GHAYFGASYW ADVGVKNLYS
QKRANENWHR IFERNKERYS AARGRAITQS VHDVTHLFTT FQDRKTIDVG GGETVELINF
GGGHTPSMTG MYIPSRHLLF TGDLGFNERL PGLLHDSHYK DWIRSFEKMM AMVPKDVTVI
PGHGTPTNMA TIKRQTYDYF VELIAEVQKV VDRGGDIEEV DAIDQSKHKD RPVFEQLAKE
NARHIYREMM AEKAKSSP
|
|---|
| |