| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3165 |
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| Symbol | |
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| ID | 3758140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 3152976 |
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| End bp | 3153905 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637784076 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_389654 |
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| Protein GI | 78358205 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.498601 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGATT CGAAACTTGC ACAGCAGCAC GGGGTACTGG TACTTAACAA ACCTAAAGGC
CCCACATCGG CTCACTGCAT CGCCAGAATC AAACGGCTGG GGCAGAAAAA AATAGGCCAC
GCCGGCACGC TGGACCCCAT GGCTCAGGGC GTGCTGCTGG TGCTGCTGGG CCAGTGCACC
AAGATTTCCG GCTATCTGAT GGAAGGCGGA GAAAAAATAT ACTCCGGCAC GCTGGAACTG
GGACGCACCA CAGACACGTG GGACGACGAA GGCGAAACAC TTTCCACAGC AGACTGGACG
CACGTAACCG AAGAGGACGT GGTCCGCGCT GTCGACTTGT GGACAGGTTC GTCGGAACAG
CAGGTTCCGG CATATTCCGC GGCCAAGCAC AAGGGGCAGC CCCTGTACAA GCTGGCACGC
GAAGGTAAGG AAACGCCTGT CAAAACAAGG CGTATAGAAA TTTCACAGGC GGAAACGCTC
GCTGTTGAGC TGCCGTTTGT GCGCTTCCGG GTTCATTGCA GTTCGGGCAC CTATATACGA
TCCCTGGCCC ACAGCTTGGG GAACCGTCTA GGGTGCGGCG CTGTGCTGAC CGAACTCATC
CGGGAGTACA GCCACCCGTT CTCGCTGGAC GAAGCCCATG ATCTGGACGA CGTTCTGGCA
GAACCGGCGG AACTTGCCGG CAGGGTCATA CCGCTGGACA AGGCATTGCC GCACTGGCCC
AAGCTGCGCC TGAGCGCAGC TGACGAAGCC CGTGTGAAAA ACGGCATGCC CCATCCGTAT
GATCCGGCAG AAATGGCCAG CATGCCTTTT ACCGAAGGTA TCAGAGCCGT ACTGCTCGAC
CCGGCCGGTG ACCCGCTGGC TCTGGCGGAA ACAGCCTACA GAAATCAGGT GCCCGTCTGG
ACGGTTCTGC GGGGGCTGTG GAATACATAA
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| Protein sequence | MADSKLAQQH GVLVLNKPKG PTSAHCIARI KRLGQKKIGH AGTLDPMAQG VLLVLLGQCT
KISGYLMEGG EKIYSGTLEL GRTTDTWDDE GETLSTADWT HVTEEDVVRA VDLWTGSSEQ
QVPAYSAAKH KGQPLYKLAR EGKETPVKTR RIEISQAETL AVELPFVRFR VHCSSGTYIR
SLAHSLGNRL GCGAVLTELI REYSHPFSLD EAHDLDDVLA EPAELAGRVI PLDKALPHWP
KLRLSAADEA RVKNGMPHPY DPAEMASMPF TEGIRAVLLD PAGDPLALAE TAYRNQVPVW
TVLRGLWNT
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