Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_0890 |
Symbol | |
ID | 3738849 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | + |
Start bp | 980811 |
End bp | 981887 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637778169 |
Product | SMF protein |
Protein accession | YP_383857 |
Protein GI | 78222110 |
COG category | [L] Replication, recombination and repair [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0758] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake |
TIGRFAM ID | [TIGR00732] DNA protecting protein DprA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000000000185705 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000000000000633505 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGATCATT ATCACTGGTT TGCCCTCAAA TCCGTCCCCC TCGTGGGGAA CGTCCTCTTC CGGCGGCTCC TGGAGCGCTT CGGCTCCCCC GAGGCGGTCT TCGGAGCGTC CGATGTCGAT CTCCGTTCCG TCAAGGGGGT GAGTCCGGCG GTGGTGGCCT CCCTCCGAAG CCATGACCCG CACCCCTTTG CCGACCGGGA GTGTGCGGCG GTCAGGCGCA CGGGGTGCCG CATCGTAACC ATCCTCGATG ATGAGTATCC ACCGCTCCTG CGGGAGATCG CCGACCCGCC CCCCTTCCTT TATGTGCGGG GAAGCCTCGC CGGTATCGGC ACTTCCGTGG CGGTGGTGGG TTCCCGTCGG GCCTCTGCCT ATGGCAGGAC GGTGACCGAG CGCATGGCCG AGGAGCTTGC CCGGAACGGT GTCACCGTGA TTTCCGGCCT GGCTCGCGGG GTCGACACCG CGGCCCACCG GGGAGCCCTG AAAGGGGATG GGACAACCGT CGGGGTGCTC GGGTGCGGCG TGGACGTGGT CTATCCGGCC GAGAACCGGC AGCTCTTCCG AGAGATGGCC GAACAGGGAG CGGTGGTGTC CGAGTTCCCC CTGGGGACCG CCCCCCTGGC CGAGAACTTC CCCCGTCGAA ACCGGATCAT CAGCGGCATC TCCCACGGGG TCCTCGTGGT GGAGGCGGCG GAGCGGAGCG GCTCCCTGGT CACGGCCCGC ATCGCCCTCG ACCAGGGGCG CGATGTCTAC GCCATTCCCG GCAACATCAC CAGCGACGGG AGCCGGGGGG CTAACCGCCT CATCCGCGAG GGGGCGAAGC TGGTGGAAAG CGTGGAGGAT ATCCTGGAAG AACTCCCCGG GGGAAGGGTG GCCCGCAGGG GAGTGCCGGC GCCGGCGCCC GACCTCCCGC CTGCCGAGGC GGCGGTCTTT GCGCTCCTGG CCCCTGAGCC GCTCCATATC GATGAGATCA TTGCCAAAAG CGCGTTGACA GTGGGGGAGC TTTCGGCTAT GTTGTTGCGC CTGGAACTCA AGGGGGCCGT AACTCAGCTT CCCGGCAAGT ATTTTTGCAC AAATTGA
|
Protein sequence | MDHYHWFALK SVPLVGNVLF RRLLERFGSP EAVFGASDVD LRSVKGVSPA VVASLRSHDP HPFADRECAA VRRTGCRIVT ILDDEYPPLL REIADPPPFL YVRGSLAGIG TSVAVVGSRR ASAYGRTVTE RMAEELARNG VTVISGLARG VDTAAHRGAL KGDGTTVGVL GCGVDVVYPA ENRQLFREMA EQGAVVSEFP LGTAPLAENF PRRNRIISGI SHGVLVVEAA ERSGSLVTAR IALDQGRDVY AIPGNITSDG SRGANRLIRE GAKLVESVED ILEELPGGRV ARRGVPAPAP DLPPAEAAVF ALLAPEPLHI DEIIAKSALT VGELSAMLLR LELKGAVTQL PGKYFCTN
|
| |