| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plut_0626 |
|---|
| Symbol | |
|---|
| ID | 3744543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium luteolum DSM 273 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007512 |
|---|
| Strand | + |
|---|
| Start bp | 728569 |
|---|
| End bp | 730092 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637768669 |
|---|
| Product | carotenoid isomerase, putative |
|---|
| Protein accession | YP_374552 |
|---|
| Protein GI | 78186509 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02730] carotene isomerase
[TIGR02734] phytoene desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGT CTGATGCAAC TGCAGATGTT CTTGTCATCG GTGCCGGCAT CGGCGGCCTG
ACCGCAGCAG CCCTGCTTCA GGAACGGGGA TTCCGGGTCG TCGTTCTTGA AAAGAGCCGA
CATCCCGGCG GCAGCTGCTC ATCGTTCCGG CGTGAGGGGT ATACGTTCGA TGCCGGGGCT
TCGGTCTTCT ACGGTTTCGC CGAAAACGGC CGCAGCGGAA CCCTCAACCT CCATACCCGG
GTGTTCCGCC GCCTCGGTGT TCTGGTCCCC TCGGTTCCCG ACCCGGTCCA GATACACTAC
CACCTGCCCG GAGGGCTTGA CCTTCGGGCG CATTTCGACC GGGCGAGGTT TCTCGGAGAG
CTTTCCGCCG CCTTCCCGCA TGAGGCCGCG GGCATCAAGC GCTTTTATCG TGAGCTCGAA
GCGGTCTACG ATATCCTCAG TTCCCTGCCG GCAGGTTCGC TTGAAGACCC CCGTCATCTG
CTTTCGGTCG GTGCTGCATA CCCGGCCAAA ACCCTCGCAC TGGCCTTGAA GACCTTCCGC
TCGATGGGCC GGACGGCCAG GCGTCATATC AGCGACCCCG ACCTTCTCCG CTTCATCGAC
ATCGAGGCAT ACTCATGGGC ACTGCAGGAC GCCATCGGGA CGCCGCTCGT CAACGCCGGC
ATCTGCCTCG CCGACCGCCA CCACGGGGGC ATCAACTATC CCCTCGGCGG CTCGGGAGCG
ATTCCCCGCG GACTTGTCGA GGGGCTGGAG AAGTTTGGCG GAGTGGTCCG TTACGGGGCC
GGGGTGGAGC GGATCCTGGT CGAGGGCGGT GCAGCCGTCG GTGTGCGCCT TGAGGGTGGT
GAAGAACTGC GGGCACGCGC GGTTGTCAGC AATGCCACCA TCTGGGACAC CTTCAACCGC
CTTGTCGACG ACAGCCGCTT CAGGATCCCT GAAGAGCGGT TCCTTCGGGC CCCGAGCTGG
TTCCAGCTCT ATCTCGGCGT TGAGGCCGGG GTTGTGCCCG AAGGCATGCA TGTCCATCAC
GTGCAGATCG ATGCATGGGA GGGGTACGAT CAGCCCGGGG GAACGCTCTA CTGCTCGGTG
CCTTCGCTCC TCGACCCCTC GCTGGCTCCT CCGGCCCACC ATGTCGTGCA TGCATTCGTC
ACGGACGAGG CGGAGCGGTG GGAAGGCCTG GAGCGGGGAA GCGAAGCGTA CACCCGGAGG
AAGCAGTCCA TGGAGGCGGA GCTTATGGGC CGTCTTGAGG GCCTCATGCC GGGGATCGGT
AGCGGCGTGA AGCTGCGGGT ATCGGCCTCG CCGCTGACGC ATGAGCGCTG GCTGAACCGG
TACAAGGGGT CCTACGGGCC GCTTCTGAAG CCGGGTCAGA ACATCCTTCT GAAGCCGCAG
AACCGTACTG CTTTGAAGAA TCTGTTCGCC GTCGGCGACA GCACCTTCCC CGGGCAGGGC
GTTATTGCCG TGACCTATTC GGGAGTCTCA TGCGCCTCGC TCGTCTCCTC GCACTTCGGC
AGGCCCCTCG TAGCGCTGGA GTAA
|
|---|
| Protein sequence | MSLSDATADV LVIGAGIGGL TAAALLQERG FRVVVLEKSR HPGGSCSSFR REGYTFDAGA
SVFYGFAENG RSGTLNLHTR VFRRLGVLVP SVPDPVQIHY HLPGGLDLRA HFDRARFLGE
LSAAFPHEAA GIKRFYRELE AVYDILSSLP AGSLEDPRHL LSVGAAYPAK TLALALKTFR
SMGRTARRHI SDPDLLRFID IEAYSWALQD AIGTPLVNAG ICLADRHHGG INYPLGGSGA
IPRGLVEGLE KFGGVVRYGA GVERILVEGG AAVGVRLEGG EELRARAVVS NATIWDTFNR
LVDDSRFRIP EERFLRAPSW FQLYLGVEAG VVPEGMHVHH VQIDAWEGYD QPGGTLYCSV
PSLLDPSLAP PAHHVVHAFV TDEAERWEGL ERGSEAYTRR KQSMEAELMG RLEGLMPGIG
SGVKLRVSAS PLTHERWLNR YKGSYGPLLK PGQNILLKPQ NRTALKNLFA VGDSTFPGQG
VIAVTYSGVS CASLVSSHFG RPLVALE
|
|---|
| |