Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_0364 |
Symbol | tolC |
ID | 3723286 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | + |
Start bp | 452227 |
End bp | 453729 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637749948 |
Product | outer membrane channel protein |
Protein accession | YP_355794 |
Protein GI | 77917979 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 75 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATAAAAC CAGACTGGAA GCAGGCGGTT CCGGGGTGTG CCGAGGAACC GTCTGCTCTT TGCCGGGGCC GTCAGCCCCG GCATTCTCGT ATCGGTTCTT TGTTTATTCC GCCAAGCAGC CGGAAGGCGC TGAATTACAT GGATATGCAT AAGATGGAAA CTGGCGGTCT GACGGTTTTG GGGCTGGTCT TTGCTTTGTT GGTGATCTTG TCCCTGCCGT GCGTGGCGGC AGAGCAAAGT ACGACCCTGA CGTTGAAACA GGCGCTGGGC GTTGCCTTGA AGCATAACCA AGCGCTGCGC CTGAGCGCTG ACGAAGTGCG ATCGGCCCGT GTCGCGCTAC GGCAGCAAAA GGACGATTTT CTTCCGGAAG CCAGCCTGGA GGCGACCGCC GGAGGTGGCC ATGAGCAAGG GGCCGTCGGA TCCGATCGCA ACTACCACGC ACTGTCGGCG GAGGTTGCGG TTAAAGTTAA CCTGTTTAAT GGATTTGCCG ATCAGGCCGC CCTGGACCAG GCCGATAAGA ATCTGTCCGC CAGACAGCAG GATTTAAACC GACAGCAACA GACCCTGGTG TTCGATACCG TCAGTGCCTA TCTGGATGCG GTGAAGAGTC TGGAGCAGAT TCAGGTGGCA CAACAAACGC TGGAGGACAA CCGGCGGCAA CTTGCCGATA TCGAAGCGTA CCACCGGGTC GGGCGACGGC CCATTACCGA TGTTTACAAG CAGCGGGCCG AAACGGCCCA GGCCCGTTCC GATCTGTTGA CCGCGCAACG CGATTATGCG GTAAGCAAGC TGGCGCTTAA GCAGGTTCTT GGAGTCGAGG CAACGACAGA CTATGAGGTC GTACTGCCGG AAGATGTCGC CTTGCGTCTG GCGCCATCCA CCGATCTCGA GAGCCTGCTT GGTCTGGCCA GAAAACAACG TCCGGACTTG TTGGCCAGAG AGAAAGAGCG GCTGGCCGCC GAGGCGCAGG TCAAGGTGGC AAAAGCGGGT GCCTGGCCGA CAGTCGATTT GTCGGCCGGA GTCGGTACAG GCTACGACAG CCGCAGCGAT AGCGCCTTCG GTAGTCAGAT GGATGAAGAT AATTTATATG GCAAGGCCAG TGTCGATCTG AATATTCCTT TGTTTGATCG TCATCTGACC CGTAATGAGG TAGCGCAGGC GCGCATCAAT CGCCACAGCA TCGATGTGGA GTGGGAACAG TTGCAGTGCC AGGTCGAGGT TGAAATCGGA CAGGCGCTCC AGGAATATTT AACGGCTCTT GATCAGCTCG AGGTTGCCAG GGCACAGCTC ACCTATGCCC AGGACGCCCT CGATTCCACC CGCCAGCGCT ATCGTGTCGG TGCGGCGACG CTGACCGAGT TGACAGATGC CCGTTCCACA TTTGTCGAGT CCCGGTATGC CTTGCTCGAA GCGCAAATCG ACCGGATGAT GCGTACCGTT GCCATGGCCT ATTATCGTGG GGATTTGAGC GAGCGATCGT TTGTCGGGGA AGGTGACGTA TGA
|
Protein sequence | MIKPDWKQAV PGCAEEPSAL CRGRQPRHSR IGSLFIPPSS RKALNYMDMH KMETGGLTVL GLVFALLVIL SLPCVAAEQS TTLTLKQALG VALKHNQALR LSADEVRSAR VALRQQKDDF LPEASLEATA GGGHEQGAVG SDRNYHALSA EVAVKVNLFN GFADQAALDQ ADKNLSARQQ DLNRQQQTLV FDTVSAYLDA VKSLEQIQVA QQTLEDNRRQ LADIEAYHRV GRRPITDVYK QRAETAQARS DLLTAQRDYA VSKLALKQVL GVEATTDYEV VLPEDVALRL APSTDLESLL GLARKQRPDL LAREKERLAA EAQVKVAKAG AWPTVDLSAG VGTGYDSRSD SAFGSQMDED NLYGKASVDL NIPLFDRHLT RNEVAQARIN RHSIDVEWEQ LQCQVEVEIG QALQEYLTAL DQLEVARAQL TYAQDALDST RQRYRVGAAT LTELTDARST FVESRYALLE AQIDRMMRTV AMAYYRGDLS ERSFVGEGDV
|
| |