Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSP_2679 |
Symbol | |
ID | 3720370 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides 2.4.1 |
Kingdom | Bacteria |
Replicon accession | NC_007493 |
Strand | - |
Start bp | 1323185 |
End bp | 1325791 |
Gene Length | 2607 bp |
Protein Length | 868 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640070855 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_352735 |
Protein GI | 77463231 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase [COG3285] Predicted eukaryotic-type DNA primase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02777] DNA ligase D, 3'-phosphoesterase domain [TIGR02778] DNA polymerase LigD, polymerase domain [TIGR02779] DNA polymerase LigD, ligase domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCCGCCA ACCCGCGACA GGATCTCGAC CGCTACCGCG CCAAGCGCGA CTTCGCGCGC ACGCCCGAGC CGCAGGGCCG TTCCGAGGCG CCGCGCCCCG AGGCGGAGAG CCTGTCCTTC GTCGTGCAGA AACATGCAGC CTCCCGTCTG CACTGGGATT TCCGGCTGGA GTGGAACGGT GTCCTGCTGA GCTGGGCCGT GACGCGCGGC CCCTCGCCCG ATCCGTCCGC CCGCAGGCTT GCGGTGCGAA CCGAGGATCA TCCGCTGGAT TATGCCGAGT TCGAGGGCAC GATCCCCAAG GGCGAATATG GCGGCGGCAC GGTCATGCTC TGGGACCGGG GCACTTGGGA ACCGCAGGGC GACTTTGCGG AGGGGCTGCG CACCGGTCAG CTCAAGATCC GCCTCGCGGG CGAGCGGATG CGCGGCCGCT GGACGCTGGT GCGCATGAAA CCCAGGCCGC GCGAGAAGGC CGAGAACTGG CTCCTCATCA AGGAGCACGA CACGCATGAA AGCGAGCAGA CCGAGGAGCT GGTCGAGCGG CACATGACCT CGGTCGCAAC GGGGCGGACC ATGGAGCAGA TCGCCGCCGG CAAGGCGCCA CCGCGGCGCA CGCGCCAGGC TGCCCTGCCC GCCTTCCGGC CGCTCCAGCT CGCGCGCCTC GTTTCGGCGG CGCCCGAGGG CGAGGACTGG ATCCACGAGA CCAAGTTCGA CGGCTACCGC TGCCTCGCGG CCCTCGCCGG AGGTCGGGCC CGCCTCTACA CCCGCTCCGG CCTCGACTGG ACGGCCAAGT TCGGCGCCCT CGTCGAGGAT GTCGAGGCGC TTGAGGCCCA GGAGGCGCTG ATCGACGGCG AGGTGATCGC GCCGGGCCGG GAGGGCGGCT CGTTCTCCGA GCTGCAGGCA CGGCTGAAAT CGGGGGGCCA GCTCCTCTTC ATGACCTTCG ACCTGCTGCT CCTCGACGGC GAGGACCTGA CCGGACAGCC GCTTCTCGCG CGGAAGGAGC GGCTCAAGAC GCTGATCGGC AAGGGGCGCG GCGCGGTGCG CTTCTCGGGC CACATCCGCG GCCACGGCCC CGAGGTGCAC GAGCGCATAT GCGCAGCGGG CCTTGAAGGG ATCGTCTCGA AGCGGGCCTC CGCGCCCTAT GCGGGCAGCC GGAACGGCGA CTGGCTGAAG GTGAAATGCG CGCACCGGCA GGAATTCGTG ATCTGCGGCT GGAACGCCTC GGACAAGCCG GGCCGTCCCT TCGCCTCGCT GGTGATGGGC AGCTACGAAA AGAGCCGTCT GGTCTACCGC GGCAGTGTCG GCAGCGGCTT CGGCGCCCCC CTGTTCCGCG AGTTGAAGCC GCTTCTGGCC GAACGGGCGC AAAGCGCCTG CCCCTTCGAC CGCACGCCGG CCGAGGCCAA GGGGGCGCAC TGGCTGAAGC CCGAGCTGGT GGCCGAGGTG AGCTTCACCG AACTGACGGC GGAGGGGCAC ATCCGGCACG GGGTCTTCGC CGGCCTGCGG AGCGACAAGG ACGCGCGGGA GGTGCGGCTC GAGGAGCCCG CGCCCGAAAC GCCCGCGCCC CGGAAGTCGG GCGTGCGGAA GAAGGGGACG AAGACGGCCC GGCCAGACGC CCCCTCACCC GACGAGCCCG CCCCCGAGCC TGCCCGGAAA CCCCGGACGG CGCGCGGGGA GAAGAAGGAG ACGACGATGG CCCGACCCGA CGACCTGCGC GTCGCAGGCA TCCGCATCAG CCACCCCGAC CGGCGGATCT ACGACCGGCC CGCCGTCACG AAGCGCGAGG TGGCGGAGCA TGCCGAGGCA CTGGCGCCGC GGATGCTGCG CTTCCTGAAG GATCGTCCCG TCTCGCTCCT GCGTTGCCCG GAAGGGGCGG CGGCGGAGTG CTTCTTCCAG AAGCACCGCA CCCGCGGCAT GCCCGTCGCG ATGAAGACGG TGCCCGTCGA GACGAAATCG GGGCCCGAGG ATTTCATCAC CCTGCCCGAT GTCGCGGCTC TGGTCGGGGC CACGCAGATG GGGACACTCG AATTCCACAT CTGGGGCTCG CGCAACCGCA GCCTTCAGCG ACCGGACCGG CTGGTGTTCG ATCTCGACCC CGACGAGGGT CTCGACTTCG CCCATGTGCG GACCGCGGCG GCCGAGCTGC GCGGTCTGCT CACGGACCTC GGCCTGCCCT CGGTGCCGAT GCTCTCCGGC GGCAAGGGGG TGCATGTGAT CGTGCCGCTG AAGCCCAAGG CCGAATGGGA GAGCGTGAAG CTCTTCTCGC GGGCGCTCGC CACCCATCTG GCTCAGGAGG CGCCCGACCG CTACACGGCC ACGATGGCCA AGGCCGGGCG CAAGGGCCGG ATCTTCATCG ACTGGCTGCG GAACGACCGC GGCTCGACGG CGATCGCTCC CTACAGCCTG CGCGCCCGCC CGGGCGCGCC GGTGGCGACG CCGGTCGACT GGGACGAACT CGCCTCGGCC CGGTCGGGCG GCGACTGGAC GATCCGCTCC ATCCGCGACC GGCTCGACCG GCCCTGCCCG CTGGCCGAGG CCTCCGCCCG GCCCGCGACA CTGGGTCGGA CCGTGATCGG GCGGCTCGAG CGACTTGTGG CAGGAGGGAA ACCATGA
|
Protein sequence | MPANPRQDLD RYRAKRDFAR TPEPQGRSEA PRPEAESLSF VVQKHAASRL HWDFRLEWNG VLLSWAVTRG PSPDPSARRL AVRTEDHPLD YAEFEGTIPK GEYGGGTVML WDRGTWEPQG DFAEGLRTGQ LKIRLAGERM RGRWTLVRMK PRPREKAENW LLIKEHDTHE SEQTEELVER HMTSVATGRT MEQIAAGKAP PRRTRQAALP AFRPLQLARL VSAAPEGEDW IHETKFDGYR CLAALAGGRA RLYTRSGLDW TAKFGALVED VEALEAQEAL IDGEVIAPGR EGGSFSELQA RLKSGGQLLF MTFDLLLLDG EDLTGQPLLA RKERLKTLIG KGRGAVRFSG HIRGHGPEVH ERICAAGLEG IVSKRASAPY AGSRNGDWLK VKCAHRQEFV ICGWNASDKP GRPFASLVMG SYEKSRLVYR GSVGSGFGAP LFRELKPLLA ERAQSACPFD RTPAEAKGAH WLKPELVAEV SFTELTAEGH IRHGVFAGLR SDKDAREVRL EEPAPETPAP RKSGVRKKGT KTARPDAPSP DEPAPEPARK PRTARGEKKE TTMARPDDLR VAGIRISHPD RRIYDRPAVT KREVAEHAEA LAPRMLRFLK DRPVSLLRCP EGAAAECFFQ KHRTRGMPVA MKTVPVETKS GPEDFITLPD VAALVGATQM GTLEFHIWGS RNRSLQRPDR LVFDLDPDEG LDFAHVRTAA AELRGLLTDL GLPSVPMLSG GKGVHVIVPL KPKAEWESVK LFSRALATHL AQEAPDRYTA TMAKAGRKGR IFIDWLRNDR GSTAIAPYSL RARPGAPVAT PVDWDELASA RSGGDWTIRS IRDRLDRPCP LAEASARPAT LGRTVIGRLE RLVAGGKP
|
| |