Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_2118 |
Symbol | truB |
ID | 3704428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | - |
Start bp | 2439503 |
End bp | 2440429 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637738593 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_344108 |
Protein GI | 77165583 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.206379 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAAC AACGCCGCTT TCAAGGCCAG GATATTCACG GAATGCTCCT ATTGGATAAA CCCGTAGGCA TCAGCTCTAA TGGTGCTCTG CAGCGAGTTA AGCAGATTTA CCAAGCCCGA AAAGCAGGAC ATACAGGCAG TCTAGACCCT CTTGCAAATG GATTGTTGCC AATTTGTTTG GGGGAGGCAA CTAAACTGTC GGGGTTTTTG CTAGAAGCCG ATAAGCGTTA TCAGGTGATG TGCCGTCTCG GCGTAGTGAC TACCACTGGG GACGCTGATG GCGAGGTGCT AGAAACCCAT CCTGTCAACG AGTTAGATAG GGACGAGGTG GCGAAATTTT TGTCCGGCTT CTCTGGCCCG CAAGAGCAAG TGCCTCCCAT GTATTCGGCG ATTAAACACC AGGGCCAGCG GCTCTATAAA CTTGCCCGCC AAGGAATTGA AGTGGAGCGC AAATCTCGCC AGGTGACTAT CCATACCATT AAATTGACGG AATTAGTTAA TAATGAGCTA GGGTTTGAGG TCTTTTGCTC TAAGGGAACT TATATTCGTA CCTTGGCTGA AGACATCGGT CGGGCGCTAG GATGCGGCGC CCATGTTATA GCGCTGCGCC GTACCCAAGT CGGTTCTTTT GGTGCTTCGG ATATGATCTC TCTGGAGGAG CTGGAAATGC TAGCCGAGAC GAATGTTGAG GCACTCGGAA ATTTGCTGTT ACCCGTAGGG CAAATTTTGG CGGATTGGCC TGCAGTAAAT CTAATCGCCG ATTTAGCCTA CTATCTGCGG CAGGGGCAAT CGGTACGGGT TCCGCAAGCT CCAAGCGAAG GCTGGGTTCG TTTAATAGAG TGTGGCAAGG GATTTTTTGG AGTAGGGCGG ATTACGGAGG ATGGACGTAT TGCTCCGCGC CGTTTGATTT TCAGTCAGAG CGGTTAA
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Protein sequence | MKKQRRFQGQ DIHGMLLLDK PVGISSNGAL QRVKQIYQAR KAGHTGSLDP LANGLLPICL GEATKLSGFL LEADKRYQVM CRLGVVTTTG DADGEVLETH PVNELDRDEV AKFLSGFSGP QEQVPPMYSA IKHQGQRLYK LARQGIEVER KSRQVTIHTI KLTELVNNEL GFEVFCSKGT YIRTLAEDIG RALGCGAHVI ALRRTQVGSF GASDMISLEE LEMLAETNVE ALGNLLLPVG QILADWPAVN LIADLAYYLR QGQSVRVPQA PSEGWVRLIE CGKGFFGVGR ITEDGRIAPR RLIFSQSG
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