| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1042 |
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| Symbol | |
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| ID | 3707264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 1150775 |
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| End bp | 1151635 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637737547 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_343080 |
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| Protein GI | 77164555 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.100807 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCCGA GGGAATACTG CCACAACAAG GCAACGCCGC CGGGAAGCAG CCTTTATTAT
AGCCTTCTCT TTTTACCTGA GGCTCAACGG CACACCGTTA CCGCGCTTTA TGCTTACCAA
AAAGAAATCG TCGGCATCGT GGCCGAGTGT TCCGATGTAG GTGTTGCTCA AACCAAGCTC
CAGTGGTGGC AAGAGGAAAT TACCCGTCTA TTTGCGGGCT GTCCCCGGCA CCCGGTAACC
CAAACCCTAG CCACTCCTAT TAAAACCTAT GATCTCCCCC AACAATCCTT CCTGCAGGTG
ATTGGGGGAG CTGCGAGCGA TCTAGAACAA TCGACTTATC CTTCTTTTCA AGCTCTGACC
ACCTATTGCT ACCAAATTGC TGGAGTCATT AGCTTAATGG CAGCTGAAAT CTATGGCTAT
CAGGACTCAG AGACTCGAAC ATACGCTGAA AATCTTGGAA TTGCCCTACA ATTGACCCAT
ATTCTGCGCA ACGTACGCCA AGACGCCGAT CGGGGCCGCA TTTATCTACC TCAGGAGGAA
CTTACCCGTT TTCAGGTCTC ATCGGAAGCT ATCTTCACTA GCTATGCTAA CTCCCAGGGG
ATGACTGCCC TCCTCGCCCA GCAAGCTGGC CAGACCCGCC ACTATTTTCG TAGTGCCTTG
GCGAACCTAG GGAAACATGA TCGCCAAACC CAGTATGCCG GCCTAACCCA GATAGCACTC
GGCCTGAACA TCTTGAATAC CATGGAAGAG GACGGCTACC CGGTCCTACA ACGGCGAACT
TCGTTGACCC CATTACGTAA GCTTTGGATC GCCTGGCGCA CCTCACGCCG CGCCCGGCGG
GGTCTCGTTC CCCAATGCTA A
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| Protein sequence | MDPREYCHNK ATPPGSSLYY SLLFLPEAQR HTVTALYAYQ KEIVGIVAEC SDVGVAQTKL
QWWQEEITRL FAGCPRHPVT QTLATPIKTY DLPQQSFLQV IGGAASDLEQ STYPSFQALT
TYCYQIAGVI SLMAAEIYGY QDSETRTYAE NLGIALQLTH ILRNVRQDAD RGRIYLPQEE
LTRFQVSSEA IFTSYANSQG MTALLAQQAG QTRHYFRSAL ANLGKHDRQT QYAGLTQIAL
GLNILNTMEE DGYPVLQRRT SLTPLRKLWI AWRTSRRARR GLVPQC
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