| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4103 |
|---|
| Symbol | |
|---|
| ID | 3681568 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 5106063 |
|---|
| End bp | 5107289 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637719451 |
|---|
| Product | heterocyst specific ABC-transporter, membrane fusion protein DevB |
|---|
| Protein accession | YP_324599 |
|---|
| Protein GI | 75910303 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR02971] ABC exporter membrane fusion protein, DevB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.816007 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.780206 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATTT TTCGCAAACC AATAAAATTT GATCCAAAAT CCAAAAAATT GACACTAGCT
TTCATAGTTC CTGTAGGATT AGCGGCTATT GGTGTACCAG CATATATTTT TGCTACTAGC
TCAAATTTTA CTTGGCAATC TACAAAGCAG AGTCATGTGA CCCCAAAAGT TGTAGTTCAA
AAGCCTGTAA TCCCTACAGT GGCAGCTTTA GGACGTATTC AAACCAAGGA TAAAATCATT
AACTTATCTG GGCCATCAGC TTTGCAGACT GCCAGGTTAG ATCAGGTTTT GGTCAAAGAA
GGGGATAATG TTCGTCGCGG ACAACTCATT GCTGTGTTGG ATAACGTCAG TCAACTGCAA
ACAACTCTAG CAAAAGCCCA AATGGGTGTT CGAGTTGCTC AATCACAACT AAGTCAAGCC
CAAGCAGGAA CTACAAAACA AGGAGAAATT GCTGCTCAAC AAGCACGCAT TGCCAGTTTA
CAAGCCCAGT TTCAAGGGGA TATTAACATT CACAAGTCTA AGATTGCTGG CTTAGAAGCA
CAATTGAGAA ATGCTGAAAC GGAATATGGA CGTTTTCGGT CGTTGTATGA GCAGGGTGCT
ATATCTGCGG TCACAAAAGA TACTAAATTA CTAGCCGTAG AAACTTTGCA AGCACAACTC
AAGGAAGCTC AAAGTTCTCT CAACCAAACT TTATCATCGT TTCCCAAACA GATTCAAGAA
GCTAAAGCTA GTTTGGCAGA GTTAAAAGAA GTTCGTCCTG TAGATGTGCA GGTGGCTCAA
AGTGAGTTAG AAAGAGCCAA GGCTGCTGTT TTAGAAGCAA AAGCTAATTT AGCCCTAGCT
TATGTGCGAT CGCCCATGAA TGCAAAAATT TTAAAGGTCA ATACTTTTCC AGGAGAAACT
ATTAGCGAAA AGGGCATAGT TGAGTTAGCT CAGACTCAAC AGATGTATGT TGTTGCAGAA
ATTTATGAAA CTGATGTTAG CAAAATTAAA ATAGGTCAAA AAGCAGAAAT ATCGAGTAAA
GCACTACCTA AAGGCATGAT TGGAACTGTG GAAAAAATCG GTGTCCAAAT AGGTAAGAGA
AATGTGGTAA ACAATGACCC TTCAATCAAT ATAGACTCAA GAGTTGCAGA AATCAAAATT
CGTTTAGACC CGGCTGATAC TAAGGAAGCC GCTAATTTTA TTAATCTGCA AGTTGATGTC
AAAATTAAAA ACACTACTAC CGTTTAA
|
|---|
| Protein sequence | MDIFRKPIKF DPKSKKLTLA FIVPVGLAAI GVPAYIFATS SNFTWQSTKQ SHVTPKVVVQ
KPVIPTVAAL GRIQTKDKII NLSGPSALQT ARLDQVLVKE GDNVRRGQLI AVLDNVSQLQ
TTLAKAQMGV RVAQSQLSQA QAGTTKQGEI AAQQARIASL QAQFQGDINI HKSKIAGLEA
QLRNAETEYG RFRSLYEQGA ISAVTKDTKL LAVETLQAQL KEAQSSLNQT LSSFPKQIQE
AKASLAELKE VRPVDVQVAQ SELERAKAAV LEAKANLALA YVRSPMNAKI LKVNTFPGET
ISEKGIVELA QTQQMYVVAE IYETDVSKIK IGQKAEISSK ALPKGMIGTV EKIGVQIGKR
NVVNNDPSIN IDSRVAEIKI RLDPADTKEA ANFINLQVDV KIKNTTTV
|
|---|
| |