Gene Ava_2704 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_2704 
Symbol 
ID3682202 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp3341484 
End bp3342413 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content44% 
IMG OID637718049 
Productfarnesyl-diphosphate synthase 
Protein accessionYP_323212 
Protein GI75908916 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0142] Geranylgeranyl pyrophosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.53186e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.671867 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAGCAG CTGATAACCT CCAGAAGATG TCAGAGGAAG CCAAATTTAA TCTAGTAGCT 
TATCTTAAAG AGCGGCAAAA ACTTTGTGAA GCGGCTTTGG ATGAAGCCAT ACCTGTTATT
TATCCAGAAA AAATTTATGA ATCGATGCGC TACTCCTTAT TAGCTGGAGG TAAGCGCTTG
CGTCCGATTC TTTGTCTGGC TACTTCGGAA ATGATGGGTG GAACAATCGA AATAGCTATG
CCAACAGCTT GCGCTGTGGA AATGATCCAC ACCATGTCTT TGATTCACGA CGACTTGCCA
GCAATGGATA ACGACGATTA CCGTCGCGGT ATGCTGACGA ATCACAAGGT ATATGGTGAT
GATATTGCGA TTTTGGCGGG AGATGGCTTA TTAGCCTATG CTTTCGAGTT CGTAGCTATC
CGTACTCCTG AAAGCGTGCC TAGAGACCGA GTATTGCAGG TAGTAGCCCG ATTGGGACGA
GCATTAGGAG CTGCTGGCTT GGTTGGGGGT CAAGTAGTTG ACTTAGACTC AGAAGGGAAA
TCAGATATTT CCTTAGAAAC GCTCAATTTT ATTCATAATC ACAAAACAGC AGCTCTTTTA
GAAGCTTGTG TGGTCTGTGG CGGCATTTTA GCTGGGGCAT CATCAGAAGA TGTACAAAGA
CTTTCACGGT ATTCTCAAAA TATTGGGCTA GCATTTCAAA TCATCGATGA TATTCTTGAT
ATCACTTCTA CTCAAGAGCA ATTAGGCAAG ACTGCGGGTA AAGACCTTTT AGCGAAGAAA
GTCACCTATC CTAGCCTATG GGGAATTGAA CAATCACGGG TCAAAGCCCA ACAGCTAATT
GAAGCAGCTT GTGCAGAACT AGAACCATTT GGAGAAGATG CACAGCCTCT GAAAGCGATC
GCTCACTTCA TCACTAGCCG TAATCACTAA
 
Protein sequence
MVAADNLQKM SEEAKFNLVA YLKERQKLCE AALDEAIPVI YPEKIYESMR YSLLAGGKRL 
RPILCLATSE MMGGTIEIAM PTACAVEMIH TMSLIHDDLP AMDNDDYRRG MLTNHKVYGD
DIAILAGDGL LAYAFEFVAI RTPESVPRDR VLQVVARLGR ALGAAGLVGG QVVDLDSEGK
SDISLETLNF IHNHKTAALL EACVVCGGIL AGASSEDVQR LSRYSQNIGL AFQIIDDILD
ITSTQEQLGK TAGKDLLAKK VTYPSLWGIE QSRVKAQQLI EAACAELEPF GEDAQPLKAI
AHFITSRNH