Gene Ava_1232 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1232 
Symbol 
ID3683272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1517885 
End bp1519219 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content46% 
IMG OID637716570 
Productheterocyst specific ABC-transporter, membrane fusion protein DevB 
Protein accessionYP_321751 
Protein GI75907455 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR02971] ABC exporter membrane fusion protein, DevB family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.00981e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTACGCG AGGTAGCAGA TCAAGGTTCC GTATTCTTCA AGCGTAACTC CCGACAATTA 
CTCATTTTGG CAGCAGCCAC AGGTTTGGCG ATCGCTGGTG TAAAGGGTTA TAGTTCACTC
CAAACTCAAG CACAGCCATC TCCTGTAAGT CTAACTCCCC AAGTCAGCAC ACCGCAGATA
AAAACGGTAA CGGCATTGGG CAGACTAGAA CCAAAGGGTG AAGTCATTAA ACTTTCCGCA
CCTTCATCAC CTGGACAAGG AAGTCGAGTA GAGAAACTGT TAGTTAAAGA AGGGGATAAG
GTAAAAGCTG GACAAGTAAT TGCTATTTTA GATAACCGCG ATCGCCTAGA GGCAGCTTAC
CAAGAAGCCC AAGAAGCGGT GAAAGTCGCC CAAGTTAACT TAGAGAAAGT CCGAGAAGGG
GCAAAAGTTG GGGAGATAGA AGCCCAGAGA GCCGAAATTG CCCGTGTCCA GGCACAGACA
ACAGGTGATG AGAGAGAACA ACAAGAAACC GTAGCCAGAT TAGAAGCCCA ATGGCAAGGT
GAGAAATCAG CCCAACAGGC CACAGTTAAG AGATTAGAGG CAGAACTGAA AAACGCTCAA
AGTGAATGGG AACGCTATCA AAAGCTTTAT GCTGACGGTG CAATTTCCCA GTCTTCCTAT
GATACTAAGC GATTAAGTGT AGATACTATT ACTCAACAGT TGAGTGAAGC GCAAGCCAAC
CTGCAAAGAA TTGATAGTAC TGGACGTAAG CAAATCAGCG AAGCGAAAAC AGCCCTATCT
CGAATCAACA CTACAGGTAG CAAACAAGTC AGCGCCGCCG CCGCTACTTT AAATAAAATT
GCGGAAGTGC GTCCTATTGA TATACAAGCA GCCAAGGTAG AGGTAGACCG TGCTTTAGCA
GCAGCAAAAC AGGCAAAGGC TAACTTAGAT CAAGTTTATG TGCGTTGGCC GAAGGACTTG
GCGGAGCCAT CGCCCCAAGA TGGTGTGATA TTTGACATCT ACACCCGTGC AGGCGAAGTT
GTATCCACTG ATGGCATCGT CGAAATTGGG CGAATCGACC AGATGTATGC AGTTGTCGAA
GTTTATCAAA GCGATGTCAA CAAAGTCCGT ACAGGGCAAA AAGTGGAGAT ATCGAGTAAA
TCTCTCCCAG GAAAACTGCG AGGTACAGTA GACCAAATTG GCTGGAAAGT CCAACGTCAG
AACATTATCA ACAGCGACCC TAGTGAAAAT ATTGATTCAC GCGTCGTAGA AGTTCATGTG
CAACTAGATG AAGCCTCAAG CCAAAAAGCT GCCAAATTCA CTAACTTACA AGTCACAGCA
GTAATTGAAC TATGA
 
Protein sequence
MVREVADQGS VFFKRNSRQL LILAAATGLA IAGVKGYSSL QTQAQPSPVS LTPQVSTPQI 
KTVTALGRLE PKGEVIKLSA PSSPGQGSRV EKLLVKEGDK VKAGQVIAIL DNRDRLEAAY
QEAQEAVKVA QVNLEKVREG AKVGEIEAQR AEIARVQAQT TGDEREQQET VARLEAQWQG
EKSAQQATVK RLEAELKNAQ SEWERYQKLY ADGAISQSSY DTKRLSVDTI TQQLSEAQAN
LQRIDSTGRK QISEAKTALS RINTTGSKQV SAAAATLNKI AEVRPIDIQA AKVEVDRALA
AAKQAKANLD QVYVRWPKDL AEPSPQDGVI FDIYTRAGEV VSTDGIVEIG RIDQMYAVVE
VYQSDVNKVR TGQKVEISSK SLPGKLRGTV DQIGWKVQRQ NIINSDPSEN IDSRVVEVHV
QLDEASSQKA AKFTNLQVTA VIEL