| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2685 |
|---|
| Symbol | |
|---|
| ID | 3672414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 2761562 |
|---|
| End bp | 2764591 |
|---|
| Gene Length | 3030 bp |
|---|
| Protein Length | 1009 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637711391 |
|---|
| Product | DEAD/DEAH box helicase |
|---|
| Protein accession | YP_316443 |
|---|
| Protein GI | 74318703 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCCA ATGTCCAAGA ATGCAGTTTC GAGGAAACAA TCGAGGCACA TCTATTCGCC
AACGGCTACG CATCGCTTCC AGCATCGGAC TACGATGCAG CGCTGGCCTT GTTTCCCACT
TCTGTACTCA CCTTCGTCCG CGCCACTCAA CTCAAGGAAT GGGCCAAGCT AGAAGCCCTG
CACGGCGCCA ACACCGAAGC CACCGTCCTC AAAGATCTGA CCCACTGGCT CGACACGCAC
GGCACGCTTG CCGTGCTGCG CAATGGATTC AAGTGTTATG GCCGCACCCT GCGTGTTGCC
TATTTCAAGC CGGCCCACGG CATGAATCCC GAGTTGGCGG CCCAGTACGC GGCCAACCGC
GTTGGCGTCA TCCGGCAGTT GCGCTACAGC CAGCGCAATA CCAATGAGCT GGACCTGGTG
CTGTCTATCA ACGGAATTCC GGTGTTCACG GCCGAGCTGA AAAACCCGAT GACCGGGCAG
ACGGTAACGA ACGCTATTGC CCAGTATCAG CACGACCGCG ACCACCGCGA GCCGCTGTTC
GAATTCAAGC GCCGGGCGCT GGTTCACTTC GCCGTCGATA CCGAGCAGGT GTTCATGACG
ACCCGACTGG CCGGCAGTGC CACGCATTTC CTGCCCTTCA ATAAGGGGCT GGATGGCGGT
GCCGGCAATC CGCCTGATCC GGCGGGCCGC GCTTATCGCA CCGCTTATCT CTGGGAAGAG
GTGTGGCAAC GCGACAGCCT GCTGGACATT TTTGCGCGCT TCATACACTT GCAGGTGGAG
GAGAAACGCA CCGACGATGG GCGGAAGATC AAGAAGGAGA CCATGATCTT TCCGCGCTAC
CACCAGTTGC GGGCGGTGCG CGAGCTAGAA GACGCGGCAA GGACGGAGGG CCCCGGCCAT
AACTATCTGG TGGAGCATTC GGCGGGCAGC GGCAAGAGCA ACACTATCGG CTGGCTGGCG
CACCGCTTGG CCTCGCTGCA CAATGAGTCC GACCACAAGG TATTCGATTC GGTAATCGTC
ATCACCGACC GCCGCGTGCT GGATCGCCAG TTGCAGGACA CGATCTACCA ATTCGAGCAC
CGACAGGGCG TTGTGCAGAA GATCGACGAG GACTCGCGGC AACTCGCCGA GGCGCTGACC
AACAGCGTGC CGATCATCAT CTCCACTTTG CAGAAATTCC CTTTCGTTGC CCGGCAACTG
GCCCGGATGG CCGAGGAGCG TAGGGAGGGG GCTGACGGAA TACTGCCCAC CCGTCGTTGC
GCGGTGATCA TCGATGAGGC CCACAGTTCG CAATCCGGCG AGACGGCTAC GGACCTCAAG
GAAGTGTTGG GTGGCCACGT ATTGCGAGAA GAAGCGGCGC GCTATGCCGT CGATGAAGGT
GTCGACAACC TGGACGAGCT TTACCGCAGC ATGGCCAAGC GCGGGCGCCA GACGAATCTC
AGCTTCTTCG CCTTTACGGC CACCCCCAAG CACAAGACCC TGGCCGTGTT CGGGCGGGAT
GAGGCAGGCA AGGCCGGCCA ACCTTTCCAC CGTTACACCA TGAGTCAAGC CATTGAAGAG
GGCTTCATCA TGGACGTGCT GAAGAACTAC ACGACCTACG CCACCTACTA CAAGCTGGTC
AAAGCCAGCG AGGACGACCC CAACGTCGAG CGCAAGCAGG CCGCCAAGGC ACTGGCTCGC
TTCATGCGAT TGCACCCCTA CAACATTGCA CAGAAGACTG AGGTGATGGT CGAGCATTTC
AACGCGGTCA CCCGTCACAA AGTTGGTGGC AAGGCAAAAG CAATGGTGGT GACCGGGTCC
CGACTGGAAG CGGTTCGCTA CAAGCTAGCC TTCGATGCGT ATATCCGTGA GAAGGGTTAT
AGCTGGATCA AGACACTGGT CGCATTTTCC GGCGAGGTAG TGGATGACGA GCTGCCGGGC
AAGACCTGGA CCGAGGTCGG TATGAACGGA GGGATCAAAG AAGGGGTGCT GCCGGAGAAA
TTCGACTCGT CCGAGTACCA AGTGTTGCTA GTCGCCGAGA AGTACCAGAC GGGCTACGAC
CAGCCGCTGC TGCACACAAT GTACGTCGAC AAACGTCTCG CCGGCATTCA GGCGGTGCAA
ACCCTGTCGC GCCTGAATCG CATGCACCCG CTCAAGGAAG ACACTTTCGT TCTGGATTTC
GTGAACGACC GACAGGAGAT CAAGGAAGCC TTCAAGCAAT ACCACGAAGG CGCCGAGATG
GGTGAGGAAG CCGATCCGAA CCAGATGTAC GCCATCAAGG CGGAACTGGA TGCGTCGGGT
ATCTACCTGC TGGAAGAGAT GCAGCGCTTC ATCGGCATCT ATTTCAAGCC GAAGCAGCGA
CAAAGCCCTG CCGATCATCA GGCAATGAAC GCCGCGCTTG ATCCGGCCGT GGATCGCTTC
CGGGCAGTGC AGGAGGAAGA TGAGGAACAG GCCGAGTTAT GGCGCGGGAA GCTCAGTGCC
TTCCGCAACC TCTACGCCTT CCTGTCGCAG GTCGCCCCCT ACCAGGATTC CGATCTCGAG
CGCCTGTATA CCTTCCTGCG CTTTCTGTCG CCCAAATTAC CCAAGCGCAC CACAGGCCAA
CGCTACAGCT TCGATGACGA GGTGCGACTG GAGTATTACC GCCTGCAGAA GATCAGTGAG
GGATCGATCA GTCTGCGTGA TGGCAAGGCA GAACTGCTGG ACGGTCCCGG CGAAGTCGGT
TCCGGAGCGC GCCACGACGA AGATGTGCCG CTCTCAAGTC TGATCGATGT GATCAACGAA
CGGTTTGGCA CGGACTTCAC CGATGCCGAC CAATTGTTCT TTGACCAGAT TATCGAGGCG
GCCATGGAGG ACGGTTCGCT GCTCGAGGCC GCTGCCGTCA ACCCAGAGGA GAAGTTTGCC
CTGCTATTTG CTGGCCTATT GGAAACGCTG TTCATCGAGC GCATGGAGCA GAACGAGGAT
ATCTTTGCGC GCTTCATGAA CGAGCGGGAC TTTCAGAGCC TTGTCTCAAA ATGGATTTCT
GGGAAAGTCT ATGCCCGACT CCGATCCTAA
|
|---|
| Protein sequence | MNPNVQECSF EETIEAHLFA NGYASLPASD YDAALALFPT SVLTFVRATQ LKEWAKLEAL
HGANTEATVL KDLTHWLDTH GTLAVLRNGF KCYGRTLRVA YFKPAHGMNP ELAAQYAANR
VGVIRQLRYS QRNTNELDLV LSINGIPVFT AELKNPMTGQ TVTNAIAQYQ HDRDHREPLF
EFKRRALVHF AVDTEQVFMT TRLAGSATHF LPFNKGLDGG AGNPPDPAGR AYRTAYLWEE
VWQRDSLLDI FARFIHLQVE EKRTDDGRKI KKETMIFPRY HQLRAVRELE DAARTEGPGH
NYLVEHSAGS GKSNTIGWLA HRLASLHNES DHKVFDSVIV ITDRRVLDRQ LQDTIYQFEH
RQGVVQKIDE DSRQLAEALT NSVPIIISTL QKFPFVARQL ARMAEERREG ADGILPTRRC
AVIIDEAHSS QSGETATDLK EVLGGHVLRE EAARYAVDEG VDNLDELYRS MAKRGRQTNL
SFFAFTATPK HKTLAVFGRD EAGKAGQPFH RYTMSQAIEE GFIMDVLKNY TTYATYYKLV
KASEDDPNVE RKQAAKALAR FMRLHPYNIA QKTEVMVEHF NAVTRHKVGG KAKAMVVTGS
RLEAVRYKLA FDAYIREKGY SWIKTLVAFS GEVVDDELPG KTWTEVGMNG GIKEGVLPEK
FDSSEYQVLL VAEKYQTGYD QPLLHTMYVD KRLAGIQAVQ TLSRLNRMHP LKEDTFVLDF
VNDRQEIKEA FKQYHEGAEM GEEADPNQMY AIKAELDASG IYLLEEMQRF IGIYFKPKQR
QSPADHQAMN AALDPAVDRF RAVQEEDEEQ AELWRGKLSA FRNLYAFLSQ VAPYQDSDLE
RLYTFLRFLS PKLPKRTTGQ RYSFDDEVRL EYYRLQKISE GSISLRDGKA ELLDGPGEVG
SGARHDEDVP LSSLIDVINE RFGTDFTDAD QLFFDQIIEA AMEDGSLLEA AAVNPEEKFA
LLFAGLLETL FIERMEQNED IFARFMNERD FQSLVSKWIS GKVYARLRS
|
|---|
| |