Gene Mbar_A3643 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbar_A3643 
Symbol 
ID3624587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosarcina barkeri str. Fusaro 
KingdomArchaea 
Replicon accessionNC_007355 
Strand
Start bp4689330 
End bp4695269 
Gene Length5940 bp 
Protein Length1979 aa 
Translation table11 
GC content43% 
IMG OID637702476 
ProductTPR domain-containing protein 
Protein accessionYP_307087 
Protein GI73671072 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[R] General function prediction only
[N] Cell motility 
COG ID[COG3063] Tfp pilus assembly protein PilF
[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGTTATCA ATCACGATGA AGCTTTTCAA AGAGGACTTG GCCTGATTAA ACAGAAAAGG 
TACGAAAAAT CAATTAATGT CTTCAACAAG ATTGTGGACA AGGATTCAGG TCACACAGGA
GCTCTATTTA ACAGAGGACT TGCACTACTG AAAATTAAAA AACCAGAAGA AGCCCTCGAC
TCCTTTGACC AGGTCCTGCA CTTCGAGCCC GAAAATTTTG ATGCCCTGTA CAAAAAAGGA
ATTGCTCTGG CCACCCTTGA AAAGTTTGAA GCAGCTCTCG AAACTTATGA CAACGCACTC
GAAATAAATC CTGACAATCC AAAAATCTGG TACCAAAAAG GACTGGCGTT TGCTGAACTG
GAAAAAAATG AGGCTTCAAT TCTTTGTTTT GAGAAAGCAA TTGAGCTTGA ACCGGAATGC
GGAAGCGCCT GGTATGCCCG AGGCACCGTA ACTGGAAAAA CCGGCAACTA CGAAGAAGCA
CTGGAATGTT TTGAGCATGC ACTTGAGATC AACCCGAAAA ACTCAGACGC TTGCTACTCA
AAAGGCCTGG TTCTTGCAAA TCTTGAGAAG TATGGAGAAG CGCTGGAATG CTTTGATTCT
CTGATTCGAG AAAAACCCAG ACATAAAGAT GCCTGGAAAC AAAAATATTT TTCGTTGATA
AAGCTGGGGA AGAACGAAGA AGCTCTGGAA TGTGTTGACG CATTTTTAAG GAAATTTCCT
GTCAGTGAGA CTGCTCTCTA TCAGAAGGGT ATTCTTTTAA ACGAACTTTC CCGCTATGAA
GATGCCGAGA AAACTTTTAC GAAAATTTTG AAAATAAACC CAGGAAATAA AGAAATCTGG
CTCAAGAAAG GTCTTGCGCT TATCCAGCTG CTAAGGCTCA ATGATGCCAT AAAAGCCTTT
GAAGAAGCTA TCAAGCTGGA TCCCACTTAT TTTGAAGCAT GGAATTACAA ATGCCTTGCT
CTGATGAAGC TTGAGGTCTA TGAAGAAGCC CTTGAAGCCT TTGATTCTGT GCTTGAAATT
TATCCAGAAA CTAAAGAAAT CTGGTACAAT AGGGCTCTTG CTCTCGTGAA ACTGCAGCAC
TTTGGAGAAG CTGCAAAATC TTTTTCCAGA ACTGCCGAAC TGGACCCTGC ATACGGTGAT
GCCCTGTACC AGCAGGGACG TTTGCTTGCC AGAGAAGGAA AGTATGAAGA AGCCCTCAAA
GCCTTCGATT CCATGCTTGA ACAAAATCCA GAATTTATTA AGGCCCAAAA ACTCAGGGGC
ACTATGCTGA TCAAGTTAGG CCGTATCGAA GAGGCTCTTG ACTCTCTTGC ACAGAGCCTT
GAAAAAGAAC CCGAAAATTA TGGGCTCTGG CTGCAGCAAG GATTAATCCT CCTTGATAAT
GGAAAATTCG AGCCTGCCCT GAAAGCTCTT GAGAAAGTTG CGGAACTCAA ACCTGATAAC
GACGCTTGCT GGATGAATAA GGGATATGCA CTCTATTCCA TGGATCGCTA TGAAGAAGCT
CTCGAAGACT TTGAAGAAGG TCTGCGGCTA AACCCGTATC TTGAGAAAGG ATGGAATAAT
AAAGGAATAG TGCTGGGAAA ACTTGGAAGA ACTGAAGAAG CCCTTGAAGC TTTTGAAAAA
GCTGTGAGCC TCAGGCCTGA CTTCGAAGAT GCCTGGAAAA ATAGAGGACT GATTTTGCTG
GCTGTTGATG ACTATGAAAA AGCCAGCGAA GCCTTTGACG AAGTTCTTAA AACAAATCCT
GAAGACCTTG ATTCCATTTA CAACAGAGGA ACAGCCCTGC TAAAACTAGG AAAAACAGAA
ACTGCCCTGG AATGTTTTGA AAAAATCCTG TCCCTTAATC CCGATTATCC CGATCTATTA
TATAGCCTTG CGGTTGCGCA GGCGAAACTA GGAAAGCAGG AAGAAGCCCT GGAAACTTTT
GAAAAACTAG CTGCTAAAAA TCCCGAAGAT CTGAAAATCC AGCGCAGGAA AGGAAAATTT
GCAATGGAAA TCGGAAAGTA TGATACTGCG CTTCAGGCTT TTGATCAGGT GCTCAGTGAA
AAGCCGGAGT CCAGGGAAGC CTGGTATAGA AAAGGGCTTG CCCTGATAAA ACTGAAACGC
TTTGAGGAGG CTATAACAGC CTTTGACGAA GTAATTGTAA GAAATCTAAA TAATAAAGAG
ATAAGTAACT CCGATTATGA GGAGCTAAAA AATCTCGATC GTGATGACAT AGATAACCCA
GCACGTGATG AGACAAAGAG GCCTGATTAC GAAGACGAGA ATCCTGATTA CGAGGATGAG
AATTCTGATT ACGAGAACGC TCGTACTTAC AAAGGATTTG CGCAAATGCA GCTTGAAAGG
TATCTCCCTG CCCTGAAAAC CTTTGAGAGC GCTCTTGAAG AAAAGCCGAA TTCCGATATT
CTCTGGTACT ACAGAGGTCT TAGCCTGTAT AGGATAAATA TGTTAGAGGA AGCAGCGTGT
GCTTTTGAGT CCTCAGTTCG CCTTAATCCT GAAATGAAGG AAGCCCTGGA GTACAGAGCC
ATCTGTCTGT TTGAAACCGA ACAATACAAA GCTGCCCTGA AGGCTCTTGA AGCTGTACTT
GAAGGAAATC CAGAGAACCT TTCTGCACTC CATAAAAAAG CTATTTGTTT CCTGCAGTTA
AAGAAATACA AATCCGGAGC TGAAACCCTT TTGAGAGTAC TGGAACTTGA CCCTAACAAC
AAAGAAGTAA AGTTTGAGCT AGGAATCGCC AGTTTCGAAT CCGGAGAATA CAATAAAGCC
CTATCTCTTT TTGAAGAAGT AAGTGAGGGC TCAGATGACT CTTTTGTATA CTGTCCTGAA
AAAAACTCAT ATGAACTAAA TAACTCTGAA CAAAATGTTT CTGAACAAGG CATTTCTGAA
CAAAACTTTT CTGAACAAAA TAACTCTGAA CAAAACTTTT CTGAACAAAA TAACTCTGAA
CAAAACTTTT CTGAACAAAG TATCTCTGAA CAAAATAACT CTAATCAAAA ATTCTCTGAA
CAAAATAACT CCAAGCAAAA ATTCTCTGAA CAAAGTATCT CTAAAGAAAA GTACTCTTCG
TTCTACTGGA AAGGGCTTGT ACTTATAAGA CTGGAAGCTT ACGAAAGAGC GCTTGAGGTT
TTTTCAAGGC TTACCGAAAA TAATCCTCTG TTTGTAGAGG CATGGTATTT GAAAGGGATA
TCCCATTCAA AACTGAAGCA GCATAAAGAA GCAGCAAAGG ATTTTGAGAA AGTCCTTGAG
CTTGACCCTG CTTATCAGGA TACATGTTAC CAGTTGGGAC TTTCCTATTT TGAGCTTGGG
AACTTTGAGG AAGCAATTAG GGTTTTTGAA TCCGCCCTGA AAATGGATCC TGAAAACCTT
GATGCTCTTT ACATGAGAAG CCTCGCTTTA CTGCGGTCGA AGAGATATGG AGAATCGGCC
TCGGGTTTCA GGGAGGTCCT TAAAAGAAAT CCATCCGATA CCGAGGCTCT TGCACACCTG
AGTACAGCCT CCTTCAAGCA GGGGTTTTAT GAAGAAGCCC TTGGACTCTT TGATCAGGTT
CTAAGCAAGA ACCCGGAGCG AAAAACTGTC CTTTTCAGGA AAGGAGTTGC TTTAAAAGCC
CTTGGGGAAG TAAAGAGGGC TTCGACTATT TTTGATTCTG TCCTTAAATT GAAGCCGGAC
TGCACTTATG CACTTGAACA AAAAGCCTAT ACTCACTTCG AGCTTGAGGA ATATCCAGAG
GCCGTTGAAG CATTTAAGAC GGCACTGGAA TATTGCCAGA AAAAAGAAGA TCTATATTAC
TACAGGGGTA TTGCCTTTTT CAGGCTTGGG AATTTTGAAG AAGCCGTAAG ATCCTTTGAA
AATGCTCTTG ATCTCGGCTG CCAGCAACCC GAAATTTCTT ATTATACAGG AATCGCCTAC
TTCGAAAACA GAGAATATGA AAAAGCCGTG GAAATCTTCA ATGCCATCCT TGATTCCGGG
GCACTTGATC TTGAAATACT GTACAAAAAA GCCCTGGCAC TTTTCGAACT TGAAAAGCCA
GAAGAAGTAG TTTCTACAGT TTATACTCTT CTCGAACTTG AAACCGAGAA CTTTAATATT
AAAGACGCTG GAAAGTTTGA AGAAGAAAAC TATGAGGAAA GCGCAGGAAA AGAAAGCATA
GGAGAAGAAA ACGCAGGAGA AATTCCAGCT TTCGAGAATA CAAAAGCTTT TGAAGAACTC
CTAGAAAAGT TTACATTTTC TCTGATACAG CTTGGAAGAT ACGAAGAAGC CCTGCTACCT
CTTGGAAAAC TTACAGCAAG TGAATCGGCT TCAAAAGAGG CCCTTTACAG CAAAGGGATT
GTGTTTCAGG AGCTCGGCAG ATCTGAGGAG GCCCTTGAAA TATTTTCGGA ACTTCGTTTC
CTTTATCCTG ACTTTGAAAA AGCCTGGTAT AGAAGAGGGC TCATTCTATT TTCTCTTGGA
TACTATGTTG AAGCTCTGGA TTCATTCGAA CAGGCTGCCC TGGAAGATCA GACAGAAATC
CCTGAAGAAA TTGACGAATT AAGCCTGGAC GAAACTCAGA GAGAAAAAAT GAGAGAAAGC
CCTGAGTTAG AAGATGAAAC AAGATTAGAA GATAAGTTTG AATTAAAAGA GAAATTAAGT
GAAACTGAAC TCGAAGATGT CTGGATGAAA ATGGGGCTTT CCCAGCTCAA ACTGGAACAC
TATGAAGCCG CCATCGAGAT ATTTGAGAAA CTTCTTGAAG TAAAACCCGA GGCTTCAGAC
CTCTGGTATG TAGCAGGGCT CGCTCTAAGG GGGCTTGACC AGGATGAACA AGCCGTTGAA
GCTTTTGAAA ATGCCGTGGA ACTTGATCCA GCTCTGGAAG CTGCCTGGGA ACAGATAGGG
CTTTCCCTTC TTAGATTGAA TATGTATGAA GAAGCAAGCC AGGCTTTCAG TTCTGCTCTA
ACCCTGAAAC CTGACAACGT AAATGCTCTC TACAGCCGAT CAGAGGCCAG TTTCCAGCTC
CAGCACTTTG AGGAAGCAGC TCAGGACCTC GAAAAAGTAC TCCTGTCCGC CCCTGATTTT
TTGAATTCTA TTGAAGCCTG TTACAGGCTC GGGATTGCCA GAATGGAGCT TCAGGAGTGC
GAAAAAGCTC TTGAGGCTTT TGATATAGTT TTGCAGCAGG ACCCGGCGCA TAGGGAAGCT
CTCTATTATA GAGGGCTTGT GCTTTTCAAC CTGAGTGAAT ACGAAGCTGC CGCTGAGACT
TTTGGAATGC TGCTGGAAGC CTCTCCCGAA GACCCTGAAA GCTTGAACTA CCTCGGGCTC
TGCCTGCTGG AACTCGAAAG TCCGGAGGCG GCACTGAAAG CCTTTGAAAA AGCCGCTCTT
TTCAATCCGA AGAATGAAGA AACTCTGTAT AATGCAGCCA CGACTCTTAT CAAGCTTAAC
CGGCCCCAGG AATCAATTGA CTATTTTGAC CGCATCCTTG ACATTTCCCC AGAGAATCTC
GATGTCCTGA ACTACAAAGG AATCGCGTTC TGCAAGCTTG AAATGTACAG GGAAGCCCTG
AAAGCCTTTG ACCTTGCACT GGAAAAAGAC CCTGAAAACA TCAAGGCAAT TTATAGTGTA
GGAGTTGTCT GCTTCAAACA GAAAATGTAT GAAACTGCCT GCAGGGCCTT TGACGAAGCT
CTTGCCATTA ACCCCTGGCA CGAGCAGTCA CTGAAATATC TCGGGATATC TCTTGCAAAA
ATAGAAGAAT ATGAGGATGC CCTGAGAACC TTTGACAGGC TGCTCAGGAT AAGACCTCAC
GATGTGCAAG CTATGAATTA CAGGGGAGTT ATCCTCGGAA AACTGGGAAA GTATACCGAG
GCCATAAACA CCTTCAATGA AATCCTTCGC CTCTATCCCG AAATGGCAGA CGCGAAAAGG
AAACTGGAAG CCTTAAAATG CATTGAAAAC AAAGATGATT CCAGTGAAGA TCTCTACTAA
 
Protein sequence
MVINHDEAFQ RGLGLIKQKR YEKSINVFNK IVDKDSGHTG ALFNRGLALL KIKKPEEALD 
SFDQVLHFEP ENFDALYKKG IALATLEKFE AALETYDNAL EINPDNPKIW YQKGLAFAEL
EKNEASILCF EKAIELEPEC GSAWYARGTV TGKTGNYEEA LECFEHALEI NPKNSDACYS
KGLVLANLEK YGEALECFDS LIREKPRHKD AWKQKYFSLI KLGKNEEALE CVDAFLRKFP
VSETALYQKG ILLNELSRYE DAEKTFTKIL KINPGNKEIW LKKGLALIQL LRLNDAIKAF
EEAIKLDPTY FEAWNYKCLA LMKLEVYEEA LEAFDSVLEI YPETKEIWYN RALALVKLQH
FGEAAKSFSR TAELDPAYGD ALYQQGRLLA REGKYEEALK AFDSMLEQNP EFIKAQKLRG
TMLIKLGRIE EALDSLAQSL EKEPENYGLW LQQGLILLDN GKFEPALKAL EKVAELKPDN
DACWMNKGYA LYSMDRYEEA LEDFEEGLRL NPYLEKGWNN KGIVLGKLGR TEEALEAFEK
AVSLRPDFED AWKNRGLILL AVDDYEKASE AFDEVLKTNP EDLDSIYNRG TALLKLGKTE
TALECFEKIL SLNPDYPDLL YSLAVAQAKL GKQEEALETF EKLAAKNPED LKIQRRKGKF
AMEIGKYDTA LQAFDQVLSE KPESREAWYR KGLALIKLKR FEEAITAFDE VIVRNLNNKE
ISNSDYEELK NLDRDDIDNP ARDETKRPDY EDENPDYEDE NSDYENARTY KGFAQMQLER
YLPALKTFES ALEEKPNSDI LWYYRGLSLY RINMLEEAAC AFESSVRLNP EMKEALEYRA
ICLFETEQYK AALKALEAVL EGNPENLSAL HKKAICFLQL KKYKSGAETL LRVLELDPNN
KEVKFELGIA SFESGEYNKA LSLFEEVSEG SDDSFVYCPE KNSYELNNSE QNVSEQGISE
QNFSEQNNSE QNFSEQNNSE QNFSEQSISE QNNSNQKFSE QNNSKQKFSE QSISKEKYSS
FYWKGLVLIR LEAYERALEV FSRLTENNPL FVEAWYLKGI SHSKLKQHKE AAKDFEKVLE
LDPAYQDTCY QLGLSYFELG NFEEAIRVFE SALKMDPENL DALYMRSLAL LRSKRYGESA
SGFREVLKRN PSDTEALAHL STASFKQGFY EEALGLFDQV LSKNPERKTV LFRKGVALKA
LGEVKRASTI FDSVLKLKPD CTYALEQKAY THFELEEYPE AVEAFKTALE YCQKKEDLYY
YRGIAFFRLG NFEEAVRSFE NALDLGCQQP EISYYTGIAY FENREYEKAV EIFNAILDSG
ALDLEILYKK ALALFELEKP EEVVSTVYTL LELETENFNI KDAGKFEEEN YEESAGKESI
GEENAGEIPA FENTKAFEEL LEKFTFSLIQ LGRYEEALLP LGKLTASESA SKEALYSKGI
VFQELGRSEE ALEIFSELRF LYPDFEKAWY RRGLILFSLG YYVEALDSFE QAALEDQTEI
PEEIDELSLD ETQREKMRES PELEDETRLE DKFELKEKLS ETELEDVWMK MGLSQLKLEH
YEAAIEIFEK LLEVKPEASD LWYVAGLALR GLDQDEQAVE AFENAVELDP ALEAAWEQIG
LSLLRLNMYE EASQAFSSAL TLKPDNVNAL YSRSEASFQL QHFEEAAQDL EKVLLSAPDF
LNSIEACYRL GIARMELQEC EKALEAFDIV LQQDPAHREA LYYRGLVLFN LSEYEAAAET
FGMLLEASPE DPESLNYLGL CLLELESPEA ALKAFEKAAL FNPKNEETLY NAATTLIKLN
RPQESIDYFD RILDISPENL DVLNYKGIAF CKLEMYREAL KAFDLALEKD PENIKAIYSV
GVVCFKQKMY ETACRAFDEA LAINPWHEQS LKYLGISLAK IEEYEDALRT FDRLLRIRPH
DVQAMNYRGV ILGKLGKYTE AINTFNEILR LYPEMADAKR KLEALKCIEN KDDSSEDLY