| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0851 |
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| Symbol | secD |
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| ID | 3627263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosarcina barkeri str. Fusaro |
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| Kingdom | Archaea |
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| Replicon accession | NC_007355 |
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| Strand | - |
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| Start bp | 1029187 |
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| End bp | 1030887 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637699739 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_304406 |
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| Protein GI | 73668391 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACA AAAAAAGCCT TCTTAAAAAT CCAAGAGTCA TTATCTTTAT TATAATCCTT
CTTGGCTCTA TAGTGGCCAT TCACCCAGGC TATACCCCCG GAAAAGGGAC AACTTCTAAT
CTTAATTTTG GTCTTGATCT GGAAGGCGGA TCCTGGCTCC AGATACAACT GGAAGGAGCA
CTTGTCCAGG TAGATGTAGA TTCCGGAAAA TTAGTTAGCG GAATTGTAGA GCCTATAATT
GGAGCCCCTA TTGAGATCAC GAAAAATAAC CTTGATGTTG GGGGCTCTGT CAATAAATCT
GTCACCTTTA CAACATCTGG GACTGTCAGC GCATCTCAGC TTGAGTATCT TGGCACGGTA
AGCGTGGACA AGCTAAGTGG AAGCACAACT CAGGTAACTA TCTCTGATAC CAGTAAGGAA
AGTCTCATCC AGTCTTACCT ATCAAAAGCC CTTGATGCAG AAGTACTTGC CAAGGGTACT
GAGGACGGAA CTGTCTATGA AATCAGGACC GCAGTCACTG AACAACAGCT TGAGTCTCTA
CTAGAAAAGG TTGGAGGTTC GATCCACAAG AACGAAGATG GGACTTCAAC TTATGAAGAA
GGAGTAAGCA CCGATACCAG AGACCTGACA AAGGAGATCC TCAGTGATAA GCTGAACTCT
CTGGGTATCA AAGATATTCC TGTAAGAACC GTAGGGGACA AATACATCCT TATTGATTTT
GCAGGCATTG ACTTGGCAAC TGCCAAAGAA ATAGCTGAAA AACCTGGAAA GTTTGAGATT
CGGATTCAGA CAACTGGAAA TGAAACCGAA CATGTCCTTT ACGGCGATTC AATTGTAAGT
GTGGGGGTCC CAAGCTTCCA TGATGAACAG TGGCATACTC CTTTCACTCT GGATGATGAT
GGAGCTCGGA CACTCCAGAA AGTTGCACTT GAAACCGGAG CAATTGATGA TCCGGATTCC
CATTACTTGA AGATGTACCT TGATGGAGTT GAAATCTATG GAGCTCCTTT GAGTTATTCT
GCAGCTGAAA AACTGCGAGA CGCTCCTATA TATTCTTGGG AAGCTTCCAC GGGTACAGAT
GATGCTGCAA AAACCGAAGC TAAAGCACTT CAGGTTCACC TTCGAGCAGG GGCTCTTCCT
GTCAATGTAG AACTTGTAGG TTCAGGACAT GTGGACGCAG GTCTCGGAGC GCAGTTCAAA
AGTGCAGCTC TGATTATAGG TTTGATTTCC CTTATTGGGG TGGCAGCTGT GGTTTACTTC
AAGTACAGAA GGTCTGAAAT CCTGATACCT ATGGTCGGAA CTTCTGCCAG TGAAGTTATC
ATGATCCTCG GAGTTGCAGC ACTGATAGGA TGGCAGCTTG ACCTAGCATC AATTGCAGGT
GTTATAGCTA CCATAGGTAC TGGGATTGAC CACCTTGTGA TTATCACAGA CGAGGTGCTT
GCTGAAGGCA AACTCCCTCC AACAAGGGTC TTTAAGTCCA GGATAACAAA GGCTTTTACA
ATCATTTTAG GGGCAGCCAC TACAAACATA ATTGCCCTGT CCCCTCTGGT CGTAATGGGC
TTTGGTACTT TGAAGGGCTT TGCAATTACT ACCATCATTG GTGTCTTAAT TGGTGTGATT
ATCGCCAGGC CGGTTTATGG TATAGTAATC AAGGAACTTC TGCACGTAGA TGAAAACGGA
ACCGCAAGTA TAACTGAATA A
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| Protein sequence | MSDKKSLLKN PRVIIFIIIL LGSIVAIHPG YTPGKGTTSN LNFGLDLEGG SWLQIQLEGA
LVQVDVDSGK LVSGIVEPII GAPIEITKNN LDVGGSVNKS VTFTTSGTVS ASQLEYLGTV
SVDKLSGSTT QVTISDTSKE SLIQSYLSKA LDAEVLAKGT EDGTVYEIRT AVTEQQLESL
LEKVGGSIHK NEDGTSTYEE GVSTDTRDLT KEILSDKLNS LGIKDIPVRT VGDKYILIDF
AGIDLATAKE IAEKPGKFEI RIQTTGNETE HVLYGDSIVS VGVPSFHDEQ WHTPFTLDDD
GARTLQKVAL ETGAIDDPDS HYLKMYLDGV EIYGAPLSYS AAEKLRDAPI YSWEASTGTD
DAAKTEAKAL QVHLRAGALP VNVELVGSGH VDAGLGAQFK SAALIIGLIS LIGVAAVVYF
KYRRSEILIP MVGTSASEVI MILGVAALIG WQLDLASIAG VIATIGTGID HLVIITDEVL
AEGKLPPTRV FKSRITKAFT IILGAATTNI IALSPLVVMG FGTLKGFAIT TIIGVLIGVI
IARPVYGIVI KELLHVDENG TASITE
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