Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbar_A0682 |
Symbol | |
ID | 3625635 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosarcina barkeri str. Fusaro |
Kingdom | Archaea |
Replicon accession | NC_007355 |
Strand | - |
Start bp | 815663 |
End bp | 816877 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 637699575 |
Product | ABC transporter, permease protein |
Protein accession | YP_304241 |
Protein GI | 73668226 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.834808 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.683549 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATAAAAT TTGCACAGGC GGCTCGTATA GCAGCTGGAA GTATAGGTAG TGCTAAGCTG AGGTCTGCAC TTACAACACT GGGGATAGTA ATTGGCATAG CTGCAGTAGT TGTTAACGCA TCTCTAGGTG CCAGTTTTAA CCAGTTTTTT ACTGATGAGA TCTCTTCTGT AGGCTCTAAT TTTATTATCG CAGCTAGCGA GCAGCCAAAT CTCTTTTTTG ATAACGAGTA CAATCTAATG AAGAATACTC CGGGAATTTC CGGGGTATCT CCAAGAAAAT CAATGAGTGG AGATCTCACA TATCTTTCTG AAACTAAAAA TGTGAATATT GCAGGAGTTA ATAAAGATTT TCAGGAAATC CAGGGACTGC AAATGGAAGA GGGCACTTTC CTGACGGACA AGGATAGCGC TGCGGCTGTA CTTGGATATG ATATTGCAAA TGAGGAGTTC AGTAGGAATA TCTCCCACAG GAGCACTGTA GAGATCGCTT TTCGGCAGGA AAACGGTACG GTTGTAAAGA AGAGTTTTAA GGTAAAAGGA ATATTGAAAA ATTCCAAGCC AACTGTTGTG AGTGAGGACA GTGACTATGA TCTGACTGTT TTCATTCCCG TTTCTACAAT GAATGAAATG ATCGGGGAAA AAGACTATGG AGCTTTCCTT GCGATGGCAG ACAGTCCTGA AAAAATTCGT GATATTTCAG ATGACGTGGA TAGCAGATTA GCCAGGAACT TCGGAGTCCC GGAAAGAGAT ATTGATGATG AGGATTTAAA ACCTTATTAC GTCTTTAATC AGGAAGAGGT TCTGGAGCAG ACTGGAAAAA TAGGAGACGC TTTGAGTTCT TTCCTGCTCG TTCTTGCTCT AATATCTCTC TTTGTGGGAT CGATAGGAAT TATGAATATT ATGCTTGTGA CAGTAACTGA AAGAACCAGA GAAATCGGGA TAATGAAATC TGTAGGCTAT AGCAATTCCA ATATTCTATC ACTTTTCTTG CTGGAATCTG TAATGGTCAG TTCCTTTGGG GGACTTGTAG GTACTGTTAT CGGTGGTTTG GGAGCTTACG CTCTTGAAAT TACCCTTAAG CTTCCTCCTG TTTTCCCCTT AGCATTGATT GAAATAGGGA TTGCAGTTTC GGTTCTTGTT GGGGTAACTG CTGGTCTTTA TCCTGCAAGA AAAGCTGCAC GCATGAATCC TGTGGATGCT TTAAGATATG AATGA
|
Protein sequence | MIKFAQAARI AAGSIGSAKL RSALTTLGIV IGIAAVVVNA SLGASFNQFF TDEISSVGSN FIIAASEQPN LFFDNEYNLM KNTPGISGVS PRKSMSGDLT YLSETKNVNI AGVNKDFQEI QGLQMEEGTF LTDKDSAAAV LGYDIANEEF SRNISHRSTV EIAFRQENGT VVKKSFKVKG ILKNSKPTVV SEDSDYDLTV FIPVSTMNEM IGEKDYGAFL AMADSPEKIR DISDDVDSRL ARNFGVPERD IDDEDLKPYY VFNQEEVLEQ TGKIGDALSS FLLVLALISL FVGSIGIMNI MLVTVTERTR EIGIMKSVGY SNSNILSLFL LESVMVSSFG GLVGTVIGGL GAYALEITLK LPPVFPLALI EIGIAVSVLV GVTAGLYPAR KAARMNPVDA LRYE
|
| |