| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0985 |
|---|
| Symbol | |
|---|
| ID | 3578998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 1153825 |
|---|
| End bp | 1155642 |
|---|
| Gene Length | 1818 bp |
|---|
| Protein Length | 605 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637684680 |
|---|
| Product | alpha amylase domain-containing protein |
|---|
| Protein accession | YP_289046 |
|---|
| Protein GI | 72161389 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0694969 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGTGC GCAGATCCCT GGCCGCGCTG CTCGCGGCCC TGCTGGGTTG TGCCACGTCC
CTGGTTGCGC TGACCGTCGC GGCTTCCCCC GCTCATGCCG CGCCGTCAGG CAACCGGGAC
GTCATCGTCC ACCTATTCCA ATGGCGGTGG AAGTCGATCG CCGACGAGTG CCGGACCACG
CTCGGCCCCC ACGGCTTCGG CGCAGTCCAG GTCTCCCCGC CGCAAGAGCA CGTGGTCCTG
CCCGCTGAGG ACTACCCCTG GTGGCAGGAC TACCAGCCGG TGTCCTACAA GCTCGACCAG
ACCCGCCGCG GCAGCCGGGC CGACTTCATC GACATGGTCA ACACCTGCCG GGAGGCGGGC
GTCAAGATCT ACGTCGACGC GGTCATCAAC CACATGACCG GCACCGGGTC CGCGGGTGCC
GGTCCGGGCA GCGCGGGCTC CAGCTACAGC AAGTACGACT ACCCGGGCAT CTACCAGAGC
CAGGACTTCA ACGACTGCCG CCGCGACATC ACCAACTGGA ACGACAAGTG GGAGGTGCAG
CACTGCGAGC TGGTCGGCCT CGCCGACTTG AAGACGTCCT CCCCCTACGT CCAGGACCGG
ATCGCGGCCT ACCTCAACGA GCTGATCGAC CTCGGCGTGG CCGGGTTCCG CATCGACGCC
GCCAAGCACA TCCCCGAGGG CGACCTGCAG GCGATCCTCT CCCGCCTGAA GAACGTCCAC
CCGGCGTGGG GCGGCGGCAA GCCGTACATC TTCCAGGAGG TGATCGCGGA CAGCACGATC
AGCACCGGCT CCTACACGCA CCTGGGGTCG GTCACCGAGT TCCAGTACCA CCGGGACATC
AGCCACGCGT TCGCCAACGG GAACATCGCC CACTTGACCG GCTTGGGCAG CGGGCTGACC
CCCAGCGACA AGGCCGTGGT GTTCGTGGTC AACCACGACA CGCAGCGCTA CGAGCCGATC
CTCACCCACA CCGACGGGGC GCGCTACGAC CTGGCGCAGA AGTTCATGCT GGCCCACCCG
TACGGCACAC CGAAGGTGAT GTCCAGCTAC ACGTGGTCGG GTGACGACAA GGCGGGGCCG
CCGATGCACT CCGACGGCAC GACCCGGCCC ACCGACTGCT CGGCGGACCG CTGGCTGTGC
GAGCACCGCG CGGTGGCGGG CATGGTCGGC TTCCACAACG CGGTGGCCGG GCAGGGCATC
GGGTCTGCGG TGACCGACGG CAACGGCCGC CTGGCGTTCG CCCGCGGCTC CGCCGGGTAT
GCCGCGTTCA ACGCGACGAA CACCGCGTGG ACGCGCACGT TCACCACTTC CCTGCCGGAC
GGCGTCTACT GCGATGTGGC GAACGGCACT TTCGTCGACG GGGTGTGCGA CGGCCCCAGC
TACCAGGTGT CCGGCGGGAA GTTCACCGCT ACGGTGCCTG CGAACGGCGC GGTGGCGCTG
CACGTGGAGG CGCCCGGCTC GTGCGGCCCG GACGGGTGCG GTACGCCGCC TGGTGGCGGG
GACGACTGCA CCACGGTCAC GGCCCGGTTC CACGCGACCG TCACCACCTG GTACGGCCAG
GAGGTCGCCG TGGTGGGGTC GATCCCCGAG CTGGGCTCCT GGCAGCCCGC CCAGGGGGTG
CGGCTGCGCA CGGACTCGGG CACCTATCCC GTCTGGTCGG GCGCGGTGGA CCTGCCCGCC
GGGGTCGGTT TCGAGTACAA GTACGTGAAG CTCAACCCGG ACGGCACCGT GGAGTGGGAG
CAGGGCGGCA ACCGCATCGC CACCGTGGAT GACAGCGGGG GCGGCTGTTC CCAGAACTTC
TACGACTCCT GGCGCTGA
|
|---|
| Protein sequence | MGVRRSLAAL LAALLGCATS LVALTVAASP AHAAPSGNRD VIVHLFQWRW KSIADECRTT
LGPHGFGAVQ VSPPQEHVVL PAEDYPWWQD YQPVSYKLDQ TRRGSRADFI DMVNTCREAG
VKIYVDAVIN HMTGTGSAGA GPGSAGSSYS KYDYPGIYQS QDFNDCRRDI TNWNDKWEVQ
HCELVGLADL KTSSPYVQDR IAAYLNELID LGVAGFRIDA AKHIPEGDLQ AILSRLKNVH
PAWGGGKPYI FQEVIADSTI STGSYTHLGS VTEFQYHRDI SHAFANGNIA HLTGLGSGLT
PSDKAVVFVV NHDTQRYEPI LTHTDGARYD LAQKFMLAHP YGTPKVMSSY TWSGDDKAGP
PMHSDGTTRP TDCSADRWLC EHRAVAGMVG FHNAVAGQGI GSAVTDGNGR LAFARGSAGY
AAFNATNTAW TRTFTTSLPD GVYCDVANGT FVDGVCDGPS YQVSGGKFTA TVPANGAVAL
HVEAPGSCGP DGCGTPPGGG DDCTTVTARF HATVTTWYGQ EVAVVGSIPE LGSWQPAQGV
RLRTDSGTYP VWSGAVDLPA GVGFEYKYVK LNPDGTVEWE QGGNRIATVD DSGGGCSQNF
YDSWR
|
|---|
| |