| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2023 |
|---|
| Symbol | |
|---|
| ID | 3566970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 2176253 |
|---|
| End bp | 2176696 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637680494 |
|---|
| Product | positive regulator of sigma(E), RseC/MucC |
|---|
| Protein accession | YP_285238 |
|---|
| Protein GI | 71907651 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3086] Positive regulator of sigma E activity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 0.00574884 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGTAAGCA TGAGTGATGA ACAGACAACG ATCCGGGCCG TAGTTCGTGC TCGAGAGGGG
GCAAGCGCCC TTGTTGAAGT AGAGCAGGGT GGCTGTGGGC GGTGTCATGA AAAAGGCGGC
TGTGGCGGCC AGCACCTAAC CCAGATGTTT TGTGCCGGGC CAAAAACTTA TCAGGTAGAC
AACGCAATCG GCGCGGATAT TGGTGATCAC GTGACGATCG CAGTTGCTGC CGGTAGCGTT
CGCCATACAG CTAATCTGGC TTACGGGGTT CCGCTGATCG GCTGCATCGG TGGAGCTGTC
ATCGGGGCTT CATTTGCCGG TGACGGCGGT GCCGTGCTTG GTGCGGCAAG TGGCTTGATT
CTGTCTTTTT TGTACATTCG TTTTCGCTCG CAAGCCAATG CTGGAAACTC GACTGAACGC
CCTCATATAA TTTCCCGTTC CTGA
|
|---|
| Protein sequence | MVSMSDEQTT IRAVVRAREG ASALVEVEQG GCGRCHEKGG CGGQHLTQMF CAGPKTYQVD
NAIGADIGDH VTIAVAAGSV RHTANLAYGV PLIGCIGGAV IGASFAGDGG AVLGAASGLI
LSFLYIRFRS QANAGNSTER PHIISRS
|
|---|
| |