| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1708 |
|---|
| Symbol | |
|---|
| ID | 3568562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 1835673 |
|---|
| End bp | 1836425 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637680175 |
|---|
| Product | Short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_284925 |
|---|
| Protein GI | 71907338 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 0.361807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCCA AGAAGAGAAT TGTCATCATC GGTGCCACCT CAGCGATCGC TGAACAGTGC
GCCCGATTGT GGGCAAAAGA GAATCCGTCT GAGATGGTTC TGGTCGGTAG AAATCAGGAA
AAGATCGAAC GGGTTGCGTC AGATCTCAAG GTGCGTGCCC CGGACACGAC AATCACCTGC
ATCAAGGCAG ATTTTCTCGA TCCAAACCAA ATTCAAACGC TGGTTGAACA GATCTACAAA
GCCGGCAATG TGGATATTGC ACTCATTGCG CATGGGTCTC TACCCAACCA AGAAGCGTGT
CAGTGCGATC TGAACCTTTG CCGAGAAGCT ATGGATGTAA ATGGTATATC GCCCGTGCTG
TTTGCCGAGG CTTTTGCCAC GCATATGCAA AAGACCAACA GCGGAACACT TGCTGTCATA
GGATCAGTTG CTGGTGATCG GGGCAGAAAA TCCAACTATG TCTATGGCGC GGCCAAGGGA
CTAGTTACAC GCTACGTACA AGGCTTGCAA CACCGCCTGG CAAACACTGA CACCAAGGTT
GTTTTAATCA AACCCGGGCC AACCGATACG CCGATGACAG CGCATCTCAA GCAATCCGGT
GCCAAACTCG CCGCCGTTGA TCGTGTCGCA AGCGAGATTG TACGTGGCAT TGCGAATGGG
CAGATGGTTG TGTACGTACC CAAAATTTGG AACGTAATTA TGATGGTCAT TCGTCATCTG
CCACATTTTG TGTTCAGAAG AATGGATATT TGA
|
|---|
| Protein sequence | MKPKKRIVII GATSAIAEQC ARLWAKENPS EMVLVGRNQE KIERVASDLK VRAPDTTITC
IKADFLDPNQ IQTLVEQIYK AGNVDIALIA HGSLPNQEAC QCDLNLCREA MDVNGISPVL
FAEAFATHMQ KTNSGTLAVI GSVAGDRGRK SNYVYGAAKG LVTRYVQGLQ HRLANTDTKV
VLIKPGPTDT PMTAHLKQSG AKLAAVDRVA SEIVRGIANG QMVVYVPKIW NVIMMVIRHL
PHFVFRRMDI
|
|---|
| |