| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1308 |
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| Symbol | |
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| ID | 3569171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 1419442 |
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| End bp | 1422675 |
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| Gene Length | 3234 bp |
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| Protein Length | 1077 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637679771 |
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| Product | Type I site-specific deoxyribonuclease HsdR |
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| Protein accession | YP_284529 |
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| Protein GI | 71906942 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.181512 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACCG TCCTCACCGC TAAGGAAGTC ACCGCCGCGT ACGGAGAACT CGTCCTCGTC
GAGTTACCCG CAATGGATCG CTTTGCTTCC CTCGGCTGGG CGGTCGCCAA CCTATACAAC
GAAACCTTCG GGCAGGATGG CACCGAGGGG CGTACCTCAG AAGCAGAGGT CATTCTCACC
CGGCGACTCC GCAAGGCGCT GGAGCGCATC AATCCGGGCT ACTCGGCATC GGCTTATGAT
CAGGCCATTG AACAACTGAC CGAGGACCGC TCGAAGCAGT TGCCGGTCAA TGCTAACCAA
GCGTTCTACA AGTTGCTGCG TGATCGGGTA AAAGTAGAGA TCACCGACAA CGAGGGCAAC
CCACAGACCG TTGAACTCAC GGTCATCGAC TGGCGAAATC CTGAGAACAA CGACTTCTTT
CTGACCCAGC AGATGTGGGT TTCGGGTGAG ATGTACAAAC GCCGCTGCGA CCTTGTAGGC
TTCGTGAATG GCATCCCTCT GGTATTCATC GAACTGAAGG CTCCCCACGT CCCCCTGAAG
TCTGCCTACG ACGACAACCT GAAGGACTAC AAGGGCCAGA GCATCCCGCA ACTGTTCCAC
CCCAACGCCT TCATCCTGCT GTCGAATGGA TCGCAGACCC GCATCGGCAC CCTGACCAGC
CCCTGGGAAC ACTTCTTCGA GTGGCGGCGC ATTGATGACG AGACAGAGGC TGGCTCCACC
TCACTGGATA CGGCCATCCG GGGGATGTGC GACAAGCGGC GACTGCTGGA CATAGTCGAG
AACTTCACCA TCTTTGAGGA GGCCCGTGGT GGCCTGATCA AAAAGGTTGC CAAGAACCAC
CAGTACCTCG GGGTCAATAA AGCCATCGCC CAGATGATCA AGCTGCGCGA ATCGGGGGAT
GTCGAGGCCG CCAAGCGTCT GGGCGTCTTC TGGCACACTC AGGGCAGCGG CAAGAGCCTG
TCGATGGTCT TCTTCACCCA GAAGATACTC CGCACCCTCC CCGGCAAATG GACCTTCCTG
ATCGTCACTG ATCGGGAGGA ACTGGACGAC CAGATCAGCA AGACGTTCAA GGCCACGGGG
GCGATCCCCA ATGCCAAGCT CGGGGGCACC AAGGACAACA TCCTGGTCAG GGCTGCCAGT
AGCAACCACC TGAAGCAGTT GCTGAAAACT GACGAGCGGT ACATCTTCAC GCTGATCCAG
AAGTTCAGGA CCGAGGCCGG GGCGCAGTAC GAGAAGCTCT CGGATCGTAG CGACATCATC
GTCATCACCG ACGAAGCCCA CCGCAGCCAG TACGACATCT TCGCCCTCAA CATGAGGAAC
GCCCTGCCCC ATGCGGCCTT TCTAGGGTTC ACCGGCACCC CGCTGATCGC TGGGGAGGAG
GAGCGCACCC GTGAGGTCTT CGGCGATTAC GTCTCAGTCT ATGACTTCGC CCGGTCTATC
GAGGACGGGG CCACCGTACC GCTCTACTAC GAGAACCGCA CCCCGGAACT CCAGATCACC
AACCAGAACC TCAACAAGGA CATCGAGAAG CTCCTCGAAG AAGCCGAATT GGATGAGGCT
CAGGAACAAA AACTGGAGCG TGAGTTTGCT AGGGAATACC ACCTGATCAC TCGGGATGAT
CGGCTGGAGA CCATTGCCGA GGACTTGGTG AAGCATTTCC TTGGGCGTGG CTATCGTGGC
AAAGCAATGA TGGTCTGTAT CGACAAGGCC ACCGCAGTGC GGATGTACGA CAAGGTGCAA
GCCTACTGGC AACAGCATCT GGCTGAACTC CATGAGAAAC TCACCAAGGC CACCGGGGAC
GACAAGGAGA TACTGGCCGA GAAGATCATG GTGATGGACA CCACCGACAT GGCCGTGGTC
GTCTCCCAGT CGCAGAATGA GATCGAAGAC CTCAAGGCCA AGGGCTTGGA CATCGTCCCC
CACCGGCAGC GGATGCTGAA GGAAGACCTC GACGAGCAGT TCAAAGACCC CGACGGCAAT
CTGCGACTGG TCTTCGTCTG CGCCATGTGG ATCACCGGCT TCGATGTGCC GACCTGTTCC
ACCCTTTACC TCGACAAGCC GATGCGGAAC CACACCCTGA TGCAGACCAT CGCACGGGCC
AACCGCGTAT CGCCGGGCAA GAGTGCTGGC CTGATCGTCG ATTACGTGGG CATCTTCCGT
AACCTTCAGG ACGCCCTCCG CATCTACGCC AAGCCCAACC AGCCGGGACA ACTGCCGATC
AACGACAAAG CTGCCCTGGT CGCTCAACTG GAAGCCCTGC TGGAACGTGC AGAATCGTTC
TGTACCGACC TTGGCATCAA TCTGAAGGGT GTGGTGAACA CGCCCCCGGA AAAACGCCTG
GAAGCCCTTC AGGAGGCTAT GAACACCATC CTCGGCGAGG GCGAGAACAC GACCAAGGCG
TACCTGCTGC TGGCGGGTCA GGTTGCCCGA ACCTTCAAGT CCATCCTGCC TGATGCGGCT
GCCAACGCCT ATGCACCGAT GTCTGTTCTG GTGGCGTACC TGGGGGCGAT GATCAAGGCC
CTGCGTCCGC CCCCGGACAT CTCCGACGTG ATGAACGATC TGGATGCCTT GCTGGATGAT
TCCATCGCCA CCGAGGGTTA CCGCATCGGC CACAAGCCAG AAGCCGAGGC CCTGATCGAC
CTCTCGCAGA TCGACTTCGC AGCCCTTCAG GAAAAGTTCG CCGAGGGCAA GAAGGCTACC
GAGACTGAGA AGCTCAAGGG GCAGATCGAA CAGAAGCTGG AGAAGATGGT CCGCGAGAAC
AAGGGGCGCA CTGATTTCCT GGAGAAGTTC CAGAAGCTGA TCGATGCCTA CAACTCGTCA
AGCCACAACC TCGAAGCCTT CTTCAAGGAA CTGCTAGCCT TTGCCCAGAA CCTCACCGAA
GAGGAGCAAC GGGCGCACCG TGAGAACCTC TCCGAGGAGG AACTGGCAAT CTTCGACCTG
CTGACCCAGC CAGAACCGGC ACTGAGCGAG AAGGAGAAGG ACGAGGTCAA GAAGGTCGCC
AAGGAACTTC TCGCCAAGCT GAAGGCCGAG AAGCTGGTCC TCGACTGGAA GCTGAAGACC
CAGACCAAGG CCGATGTCGA GCGCACCATC CGGGACTTCT TCATCAAGCT ACCGTCTGCC
TACACCCCGG CACTCAAGAA GGACAAGCGG GTGAAGACCT ATGCGCATGT CTATGAGAAT
TATTTCGGGG CAGGGCAGAG TGTCTACCAG CGTGGTGCCG CAGGTGCCCA CTGA
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| Protein sequence | MTTVLTAKEV TAAYGELVLV ELPAMDRFAS LGWAVANLYN ETFGQDGTEG RTSEAEVILT
RRLRKALERI NPGYSASAYD QAIEQLTEDR SKQLPVNANQ AFYKLLRDRV KVEITDNEGN
PQTVELTVID WRNPENNDFF LTQQMWVSGE MYKRRCDLVG FVNGIPLVFI ELKAPHVPLK
SAYDDNLKDY KGQSIPQLFH PNAFILLSNG SQTRIGTLTS PWEHFFEWRR IDDETEAGST
SLDTAIRGMC DKRRLLDIVE NFTIFEEARG GLIKKVAKNH QYLGVNKAIA QMIKLRESGD
VEAAKRLGVF WHTQGSGKSL SMVFFTQKIL RTLPGKWTFL IVTDREELDD QISKTFKATG
AIPNAKLGGT KDNILVRAAS SNHLKQLLKT DERYIFTLIQ KFRTEAGAQY EKLSDRSDII
VITDEAHRSQ YDIFALNMRN ALPHAAFLGF TGTPLIAGEE ERTREVFGDY VSVYDFARSI
EDGATVPLYY ENRTPELQIT NQNLNKDIEK LLEEAELDEA QEQKLEREFA REYHLITRDD
RLETIAEDLV KHFLGRGYRG KAMMVCIDKA TAVRMYDKVQ AYWQQHLAEL HEKLTKATGD
DKEILAEKIM VMDTTDMAVV VSQSQNEIED LKAKGLDIVP HRQRMLKEDL DEQFKDPDGN
LRLVFVCAMW ITGFDVPTCS TLYLDKPMRN HTLMQTIARA NRVSPGKSAG LIVDYVGIFR
NLQDALRIYA KPNQPGQLPI NDKAALVAQL EALLERAESF CTDLGINLKG VVNTPPEKRL
EALQEAMNTI LGEGENTTKA YLLLAGQVAR TFKSILPDAA ANAYAPMSVL VAYLGAMIKA
LRPPPDISDV MNDLDALLDD SIATEGYRIG HKPEAEALID LSQIDFAALQ EKFAEGKKAT
ETEKLKGQIE QKLEKMVREN KGRTDFLEKF QKLIDAYNSS SHNLEAFFKE LLAFAQNLTE
EEQRAHRENL SEEELAIFDL LTQPEPALSE KEKDEVKKVA KELLAKLKAE KLVLDWKLKT
QTKADVERTI RDFFIKLPSA YTPALKKDKR VKTYAHVYEN YFGAGQSVYQ RGAAGAH
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