Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_4651 |
Symbol | |
ID | 3370201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 5513236 |
End bp | 5515167 |
Gene Length | 1932 bp |
Protein Length | 643 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637655020 |
Product | S-type Pyocin |
Protein accession | YP_237718 |
Protein GI | 66047877 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3064] Membrane protein involved in colicin uptake |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.139923 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACAGA ACGAGATTAC ACTGCCCCCT ATCATCGTTA CACCTGATCC ACCACTGCCT CAGCCTCCAG GTCCTATTCC AGGAGGTGGT GTGATTGCCA AGCCGCTGCC ATGGGACGGT AAAGTGCCTG CAGACGCTGA AATTGATAAG TTCTTTAGTC AGCAAGGAAT TAAAGGTGAG CAGTACACGA TTTCTGTGGT GGCAACGGTA GCCACTACTC AACGAAACAT TGAGCAAGCC TTTACGGCCT ATTTGCCGCA ATTACCGGCA GACATTGACG CAGAAATTGC TGCTGCAGTC GGGCCCAATC CTTTATCCGC ACTTGAAAAG GCCAAAACTG AAAAAAGTGT GGTGGATAAC CTGATCACGC AGAACACTGC AGAACTGGCA AATGCCAACG CAGCAGCCAG CGCTTTTTTT GGCAGAAATG TGTTGGCAGT AGAAATTAAA AAAAGCGCAG TAGATTTTGT AAATATCTTT CAATCAAGAC AAGATCGTGG CACCCCGCTC GAGGTTTTCA AAAGTTGGGA AGCGTCAGCT ACCGCCGCCT ATGCTGCGAA AATTATTGAG GAGAAGATCC GAATACTCAC GGAAAAGTCA GCTGCACTTT TACAGACCGT GGCTACGGCG CAGGCTGAAG AGGATGCTCG CATTGCTGCA GAGGCAGAAG CTAAACGTTT GGCTGATGAA GCAGCGGCTG CAGAAGCCAA ACGCTTGGCT GATGAGGCAG CGGCTGCAGA AGCCAAACGC TTGGCTGATG AAGCAGCAGC TGCGGAAGCC AAACGCATTG CCGAAGAGCA GGCTCGTATT GCTGCAGAGG CCGTTCGGAC AGCTAATACA TTCCGTGCGC CTGGCCCGCT TTCAGCTACC GCTCCCGTTA TCATGACGGC TGCGGGAACG ATTGCCGTTA TCGAAGCAGC GACAGTTACC TTGCAAGCAG CTATCCGCTC CGCTGTTGCC GCGCTAACTA ATTTAGCCGC TGGTACGGCT TCGGGGCTTT TGGTCGGCGT GTCAGCTTTG GTCTATTCAC CCAAACTGGC TAACGGAGAG TTACCTGAGC GTTATGCTTT CAACACACCA TTGTCGGATC TGACGCCTGA GCTTGGTAAA GACTTGCCAG CGATTGCGGC ATCTGGTGGT ACTGTTGATT TGCCATTTCG ACTTAGCTCT AAAACAGCAG CAGATGGGCA GTCTGAAGTT TTTGTTGTCA AGACCGATGC TTTGACAGCA TCCTCGAAAG TAAGAGTGGT ATCAGCTGTT CTTGATGTAG AGCAGAACAC CTATAGCGTG ACAACGGGAG ATGTACCACC CAGGATATTG ACTTGGACAC CGATTGTCAG TCCTGGGAAT AGCTCAACAA CATCGCCTGC TGAACAGCCA GCTCCACCCG TGTATACGGG GGCTGCAGTA ACGCCCGTTG AAGGGAGGAT AGATGCATTC CCGGCTGTTT CAGAAGCCAG TTTTGATGAT TTCATTACGG TTTTTCCGGC AGACTCTGGT TTACCACCCA TCTATACGAT GTTCCGGGAT CGGCGAGAAG ATCCGGGCGT TGCAACAGGT GTCGGTCAAC CTGTATCGGG GATCTGGCTA GGGGCTGCAT CGCAAGGTGA AGGGGCTCCC ATTCCATCGC AGATTGCTGA TCAGCTTCGC GGCAAGGAGT TCAAGAACTT CAGAGACTTT CGGAAAGCTT TCTGGCTCGC TGTCGGTGCT GATCTAGAGT TGTCAAAACA ATTCAAAGGT TCAAATAATA CTCTGATTAA AGGAGGCACT GCGCCATTTG CAATTCCGAG CGAGCAAGTT GGAGGGCGTG GTCAATTTGA GATTCATCAC GTCATACCTG TTCATCCAGC CGGAGCGGTT TACGATGTGG AAAACATGCG TATAATGACC CCCAAACTAC ATATTCAAAC TCACACCAAG AAAGAGGGAT AG
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Protein sequence | MSQNEITLPP IIVTPDPPLP QPPGPIPGGG VIAKPLPWDG KVPADAEIDK FFSQQGIKGE QYTISVVATV ATTQRNIEQA FTAYLPQLPA DIDAEIAAAV GPNPLSALEK AKTEKSVVDN LITQNTAELA NANAAASAFF GRNVLAVEIK KSAVDFVNIF QSRQDRGTPL EVFKSWEASA TAAYAAKIIE EKIRILTEKS AALLQTVATA QAEEDARIAA EAEAKRLADE AAAAEAKRLA DEAAAAEAKR LADEAAAAEA KRIAEEQARI AAEAVRTANT FRAPGPLSAT APVIMTAAGT IAVIEAATVT LQAAIRSAVA ALTNLAAGTA SGLLVGVSAL VYSPKLANGE LPERYAFNTP LSDLTPELGK DLPAIAASGG TVDLPFRLSS KTAADGQSEV FVVKTDALTA SSKVRVVSAV LDVEQNTYSV TTGDVPPRIL TWTPIVSPGN SSTTSPAEQP APPVYTGAAV TPVEGRIDAF PAVSEASFDD FITVFPADSG LPPIYTMFRD RREDPGVATG VGQPVSGIWL GAASQGEGAP IPSQIADQLR GKEFKNFRDF RKAFWLAVGA DLELSKQFKG SNNTLIKGGT APFAIPSEQV GGRGQFEIHH VIPVHPAGAV YDVENMRIMT PKLHIQTHTK KEG
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