| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1661 |
|---|
| Symbol | |
|---|
| ID | 3367163 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1864113 |
|---|
| End bp | 1866959 |
|---|
| Gene Length | 2847 bp |
|---|
| Protein Length | 948 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637652004 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_234747 |
|---|
| Protein GI | 66044906 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCAGG TTCGTAAACT GGTATTAGCA ATCGCTGCGG CATCAGCGCT GTCATCGGGT
ATGGCGCAGG CGCTGGGGCT CGGGGAATTG TCGGTCAAGT CGACCCTGAA TCAGCCATTG
GTAGCGGAAA TCGAGTTGAC CGAAGCTCAG GGGCTCAACG CAACGCAAGT TGTGCCCAGC
CTGGCCACCA CGGCCGACTT CGCGCAGGCG GGTGTGACCC GTCAGGCATT TCTCAACGAT
CTCACCTTTA CCCCGGTTAT CAATGCCAGC GGTAAAAGTG TCCTGCGCAT TACATCCAGC
AAGCCGGTGC GCGAGCCTTA TGTGAAGTTT CTGGTTCAGG TGCTCTGGCC CAATGGCCGG
TTGCTGCGTG AATACAGCCT TCTGCTCGAT CCGCCGAAAT TCTCTCCCGA GGCAGCCGCT
GCGGCCGCTG CCCCGGCCCC CGCTGCCGCG CCCGCCGCGC CTGCGCAACT GGCAACAGTA
GCCCCTTCGG CAGAAGCGCC GGCAGCCGAG GCACCAGCAC CAGCACCGGC TGCCAACCCA
GCCGCAGTGC CGCCGCCAGC CGCCGACAAG CAGTCACAGT ACGTCACCGC CAATAACGAC
ACCTTGTGGG AAATCGCTGC CAAGGTGCGT ACTGGCGGGA CTGTCCAGCA AACCATGCTG
GCGATTCAGG CGTTGAACCC GGATGCGTTC ATTGGTGGCA ACATCAACCG CCTGAAGAAA
GGGCAGGTGC TGCGCCTTCC AACGCCGCAA CAGACCACCG CGCTGCCGCA ATCACAGGCA
GTGGCAGAAG TTTCCCGCCA ATACAGCGCC TGGCGTGAAG GTCGCCGTCT GCCGGCCGGT
ACCCGTCAGG TCGATGCTAC CCGTCGTGAC CGTGCGGGCG CGGCGCCTTC CAAAGTTGAT
ACCTCCGACA ACCTCAGCCT GGTGTCGGCA AGCGGCAAGC CTGCGGCGAA AGGTGCGGCG
GGCGACGGTG ACCTTGGCAA CAAGCTGGCC GTGGCTCAGG AAGCGCTGGA TACCACACGT
CGCGACAATG CCGAGCTGAA AAGCCGCATG AACGACCTGC AAAGCCAGCT CGACAAGTTG
CAGCGTCTGG TCGAGTTGAA AAACGGTCAG TTGGCCAAGA TGCAGGCCGC TGGCGCAGCC
GTGCCGCCTC CTGCCGCCAC TCCTGATGCC GCGACGCCTG CCAATGCGGC AGTGCCTGCC
TCGCTGGTCG ACGCCAACGG TGCGCCGGTC AAACCGGCTG GCGAGATCGC GCCTGAAGAT
GCGCTGCCTG CCGGTGCTGC CGAAGTTGCG ACGCCGGCGC CAGAGCAGCC GCTGGCGGTG
GAGCCGGTTG CTGCAGCAGA CGAGGACGAG GATGCGCTGC AGAAAATCAT CAACAACCCT
GTGCTGCTTG GCCTGATCGG CGGTGCGGTG TTGCTGATTC TGGCCTTGCT GCTGTTGTTT
CTGGCGCGTC GTCGCGCGGC GAAGGCCGAG GCCGAGAAGC ACAAGCGCAT GGCGCGTGCG
CTGGCCGAGG AGTCGGATTT CGTCTCTGAC ATGGACATGA ATGCACCGCC CGCCAGCTTC
GACGGGCTTG ATGTGCCGCC GCCCAACGTG CGTATGGGCG GCGCCGCAGC CGCCGCTGCC
GGTCGCGAAC GTCCTGCCGA TCCGCTGGTT CAGGCCGAGA TCCATATCGC TTACGGTCGT
ATGAATCAGG CGATTGAGTT GCTGGAAGAA GCCGTCAACG AAGACCCCAA GCGCGACGAT
ATCCGTCTGA AACTGATGGA AATCTACGCC GAGCAGGGTA ACAACAAAGC CTATGCCGCC
CACGAACGTA AACTGGTGGC TGCGGGAAAG CTTGAAGCTG AGGTCGAGCA GCGGGAAGAA
CTTAACTCGA CCCTGAAGCC GGTGGCACCT GTTGCTGCGC CGCTGGCTTC TGAAGCCTCA
TCGGCTGCTC CTGCCGTCGC TGCAGCCGCC GCGGCGGCTA CAACAGCCGC ACTGGTTGCA
GAGCTTGATG CCAAATATCT CGAAGAACTG CTGGCCGATG ATGCGGCAGA GCAGGATGCC
GAGCCTGAGC CTGAGCCTGA GCCTGAGCCC GAGCCCGAAA TTGTTGCTAC ACCTGAACCT
GAGCCGGCAG TAGTCGCGCC GCTGGCCGCA GAGCCTGTTG AAGAGGCAGA CCCGTTCGAT
AACGATTTTG ACTTGAGCCT GGACGAGTTC GAAGAACCGT CTGTGCCTGA AGTCTCTACT
GTGAATGACA TCGATGACCT GATGCTCGAC GAGCCCAAGG TATCAGCGGT AGCGGATGAC
GAAGCGCTGA GCTTCGAGTC GGTCATGCAG CAGCAGGAAG AGGCCCGTGC AGCGACAACG
CCGCAAGACC TTGCCGACTT CGACCTCGAT CTGTCCGAGG AAGACCCGGC CCTCAAGAGC
GAAGATGATT TCCTGCTCGG TCTTGGCGAG GATCCACTGG ATTTGGGTGA AACCTCGCCT
GTACCGCCGG TCAGTGATGA CCTGGAGCTT CCAGAGGATT TCGACCTGTC GCTGGCGGAC
GAGATTGAGA CCGATCAGGC AAGTCAGGCG TTCGCGACTG AAATCGATGA CGTCAATGCC
GAGCTTGAGC GTCTTTCGCA GAATCTTGAG CATCCGCCGC TCGATGAGCC GAGATTCACT
GCCGAGGATG CGGCAGCGCT GGATGACGAG CCGGACTTCG ACTTCATGGC CGGTACTGAC
GAAGCGGCGA CCAAACTCGA TCTGGCGCGT GCCTACATCG ACATGGGCGA TGCGGACGGC
GCTCGGGATA TTCTTGATGA GGTCGTCACC GAGGGCGATG ACGGTCAGAA AAGCGAAGCG
CGGGAGATGC TTTCGCGGCT GGCCTGA
|
|---|
| Protein sequence | MVQVRKLVLA IAAASALSSG MAQALGLGEL SVKSTLNQPL VAEIELTEAQ GLNATQVVPS
LATTADFAQA GVTRQAFLND LTFTPVINAS GKSVLRITSS KPVREPYVKF LVQVLWPNGR
LLREYSLLLD PPKFSPEAAA AAAAPAPAAA PAAPAQLATV APSAEAPAAE APAPAPAANP
AAVPPPAADK QSQYVTANND TLWEIAAKVR TGGTVQQTML AIQALNPDAF IGGNINRLKK
GQVLRLPTPQ QTTALPQSQA VAEVSRQYSA WREGRRLPAG TRQVDATRRD RAGAAPSKVD
TSDNLSLVSA SGKPAAKGAA GDGDLGNKLA VAQEALDTTR RDNAELKSRM NDLQSQLDKL
QRLVELKNGQ LAKMQAAGAA VPPPAATPDA ATPANAAVPA SLVDANGAPV KPAGEIAPED
ALPAGAAEVA TPAPEQPLAV EPVAAADEDE DALQKIINNP VLLGLIGGAV LLILALLLLF
LARRRAAKAE AEKHKRMARA LAEESDFVSD MDMNAPPASF DGLDVPPPNV RMGGAAAAAA
GRERPADPLV QAEIHIAYGR MNQAIELLEE AVNEDPKRDD IRLKLMEIYA EQGNNKAYAA
HERKLVAAGK LEAEVEQREE LNSTLKPVAP VAAPLASEAS SAAPAVAAAA AAATTAALVA
ELDAKYLEEL LADDAAEQDA EPEPEPEPEP EPEIVATPEP EPAVVAPLAA EPVEEADPFD
NDFDLSLDEF EEPSVPEVST VNDIDDLMLD EPKVSAVADD EALSFESVMQ QQEEARAATT
PQDLADFDLD LSEEDPALKS EDDFLLGLGE DPLDLGETSP VPPVSDDLEL PEDFDLSLAD
EIETDQASQA FATEIDDVNA ELERLSQNLE HPPLDEPRFT AEDAAALDDE PDFDFMAGTD
EAATKLDLAR AYIDMGDADG ARDILDEVVT EGDDGQKSEA REMLSRLA
|
|---|
| |