| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTOA0037 |
|---|
| Symbol | |
|---|
| ID | 1187327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004633 |
|---|
| Strand | + |
|---|
| Start bp | 39438 |
|---|
| End bp | 40784 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637408370 |
|---|
| Product | major facilitator family transporter |
|---|
| Protein accession | NP_808695 |
|---|
| Protein GI | 29171511 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 0.729938 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATG TAACGGATTT GCCTTGTAGT GAAAGTTCAG GTCAGCGAAA AGCTCGGCTG
CGCAGGGTTG CTGGAGCAAC AATAATTGGC TCAATGTTGG AATGGTACGA TTTTTATCTG
TATGCAATGA TGGCTGCAAC GGTTTTTGCG AAAGTTTTTT TTGACCCTAG CGATCCCCAA
ACGGCAACGC TTATGGCATT TTCAACGTTC GCAATTGGAT TCATAGCGCG GCCATTTGGT
GGCGTAATAT TCGGGCATTT GGGCGATAAG TTCGGTCGCA AGCGAATGCT GATGGTGACG
TTTTGCCTGA TGGGCATTTG TACGACTGCA ATCGGCCTGG TTCCTGGGTA TGCCACGATG
GGCATCTGGG CTCCAATTCT GCTGGTGCTG ATTCGAATTC TCCAAGGCCT TGGTGCCGGT
GCTGAACTTG CTGCTGCAGC GGTGACTGCA TATGAACATG CTGAAGAAAA TAAGCGTGGA
AGCCAAGGAG CGTGGCCCGC GCTAGGATTG AACCTGGGTC TGCTTCTCTC ATCCCTGACG
GTCTATCTCC TTACGATGCC AGGAGAAGAG TTTCTCATTG AGGGAGGTTG GAGAGTACCG
TTTATTGGCA GCATCGTTTT AGTTTTGGTT GGTATGTGGG TACGAAACAG CATCCCTGAA
ACGATTGCAT TCCAAGAGAT AAGTAATGCG AAGCAAGCTC AAGGTTCATC GGAGATAGGA
ATAGCAAAAA CACCTCTGTT GGCCTTGCTG AAGAAAGATT TTAAAGGTCT AGTAGTCGTG
CTTCTTGTTG CAATTGGGTA CAACGCACTC AGCTATATAT TCAAAACATT TTCACTTGCT
TATCTCACTT TGTACAAAGG TGTGTCTGCA AACACTACAT CACTTTCGGT AACTATTGCC
AGTCTAATAG CAATCTTCAC TGTCCCCTGC TTTGGAGCTT TGTGTGACCG TTGGAGCAGC
AAAAAGGTGT TGATGGCCGG GGGAGTTCTG TCAGCCATAT TTGCATACAT CTTCATGCAG
CTTCTTGAGA CGGGCCAGAA CCTATGGATA TTCATTGCAA TTGGCCTTGC GACTGGTGTG
CTGGCTCCGA TGATGTTTGC CCCGCAAGGC TCTTTCTTGA GTCGTCAATT CCCTACGCAT
ACAAGGTCTT CAGGCGTAGG CACAGGCCGT GAGATCGGAA CTGCAATTGC TGGTGGTTTA
GCACCGCTTG GAGCGTTGTC GCTGGTTTCA AACTCACCCA AGCACTCTAC AATTGGCGTC
GTATGGATTT TAATATTGTC GGCAGTCTTG CTTGTTGTGG CTAGTGCTTT TGATCAGGGT
GGAAAGAACT CCAGCTTCAA AAATTGA
|
|---|
| Protein sequence | MSDVTDLPCS ESSGQRKARL RRVAGATIIG SMLEWYDFYL YAMMAATVFA KVFFDPSDPQ
TATLMAFSTF AIGFIARPFG GVIFGHLGDK FGRKRMLMVT FCLMGICTTA IGLVPGYATM
GIWAPILLVL IRILQGLGAG AELAAAAVTA YEHAEENKRG SQGAWPALGL NLGLLLSSLT
VYLLTMPGEE FLIEGGWRVP FIGSIVLVLV GMWVRNSIPE TIAFQEISNA KQAQGSSEIG
IAKTPLLALL KKDFKGLVVV LLVAIGYNAL SYIFKTFSLA YLTLYKGVSA NTTSLSVTIA
SLIAIFTVPC FGALCDRWSS KKVLMAGGVL SAIFAYIFMQ LLETGQNLWI FIAIGLATGV
LAPMMFAPQG SFLSRQFPTH TRSSGVGTGR EIGTAIAGGL APLGALSLVS NSPKHSTIGV
VWILILSAVL LVVASAFDQG GKNSSFKN
|
|---|
| |