| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5434 |
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| Symbol | |
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| ID | 1187121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6178764 |
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| End bp | 6180320 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637396751 |
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| Product | hypothetical protein |
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| Protein accession | NP_795161 |
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| Protein GI | 28872542 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03362] type VI secretion-associated protein, VC_A0119 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCTACT CAAGCAAACT TTCTGCTCAC TACCTGGAAC TCGCCAAGGC CCCTGTTTCG
CCTGCTAGTT TTGCGGGCGA TGACGTTCGT TTTTCGGTCG AGTTCGAGTC GCTGGAAAGC
GAGTTGGGTA AAGCCCAGTC CATGCATGAA GCAGGGCAGA TCGACTGGCT TAAAATCCGT
GAAAACAGTG AGAGCCTGCT TCGCACCCAG TCCAAGGACT TGCGGGTAGG TGTCTGGCTT
GCATGGGCGC TTTATCAGCG AGAGTCCTTC CAGGGCCTGT TGGCCGGTCT CGGTGTTTTG
CACCATCTTT GCGAGCAGCA CTGGGCTGAC ATTCACCCGA AAAAGGCCCG CACGCGCGCC
GCTGCCATTG GCTGGCTGGT GCCGCGTCTC GAGCAGGTGC TGAACGAAAA CGTCGCGCTC
AAGGAGCAGT TGCCAATGTT CCGGCGTCTG GTCGAACACC TTGAAGGCCT CGATAAAGCG
TGCACCGAAC ATTTGGGCGA CGACGCACCT TTGCTACTGC CGATCTCCCG CCGTCTGAAA
AGCATGGTCC AGCGCGCTGC TGACAACCAG CCCGAGCCTG GTGTAGTCGG CGCAGCGGTT
GCGCAGGTCA AGCAGGCTGC CACACAACTC TTCACGCCTG GTGCGCCTAT CGATAACGAA
AAGGAAGCGC ACAAGGCCCT GCGCGCCCAG CAGGAAAACG CGCGCCCTTT ATGTGCATGG
TGGCTTAAAC AGAAAGCCAG CGATCTGCGA GCCTTGCGGC TTAATCGCAC ACTGCTGTGG
CTGCCGATCG ATGCTGTTCC GGAGCGTAAC GCCGAGCAAA TCACTGCCCT GCGAGGCCTG
CCGGCAGACA AACTCAAGGC TTATCGGGAT CGCTACGAGC AGGCCAAATA TGCCGATCTC
TTGGTCGAGC TGGAAGCGAG CCTGGCGAAG GCGCCTTTCT GGTTCGACGG CCAGCGAATG
GTATGGGAAT GCCTGCAAGG CCTGAACGCA GAGATGGCGA TGCGTGAAGT GGAAATCCAC
TTCGCGCTTT TGATTCAGCG CCTGCCCGGC ATCATCGAAT TGCGCTATCA CGATGGAACG
CCGTTCGCCG ACCCGGCGAC GCGTGCCTGG ATCAGCGCAA GCGTCTTGCC GCATCTGCAA
ACCAACAACG CACCGCGCAA GGTGGAAGTT ACCGATACCC AGCCAGCCTG GGAAGTGGCC
CTTGAAGCGG CGTTGCTCGT CCTGCGCAAA GAGGGCTTGA AAGCCGCTGT GCAGTTCCTC
AAGCAAGGGC TGCAAAAGGC GCAGGGCGGA CGCGCTCGAT TTTTCTGGCA GTTCGCTCTC
GCCCGACTGT GCTTCGTGGC CAAAAAATAC GAACTGGCCA AGGCGCAACT CGAGACGCTG
GATCAGACAT TACAGGAGTC GGGCCTGCAT GCATGGGAGC CCGATCTTGC GCTGGAAGTG
CTGCATCTGC TGCATAGCTG CTGTGAGCTG CTACCACAGA ACCAAGTGGT GCGCGAACGC
AAGGAAGAGA TTTATCGCAG GCTGTGCCAC CTAGACCTCG AAGTGGTACT CGAATAG
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| Protein sequence | MSYSSKLSAH YLELAKAPVS PASFAGDDVR FSVEFESLES ELGKAQSMHE AGQIDWLKIR
ENSESLLRTQ SKDLRVGVWL AWALYQRESF QGLLAGLGVL HHLCEQHWAD IHPKKARTRA
AAIGWLVPRL EQVLNENVAL KEQLPMFRRL VEHLEGLDKA CTEHLGDDAP LLLPISRRLK
SMVQRAADNQ PEPGVVGAAV AQVKQAATQL FTPGAPIDNE KEAHKALRAQ QENARPLCAW
WLKQKASDLR ALRLNRTLLW LPIDAVPERN AEQITALRGL PADKLKAYRD RYEQAKYADL
LVELEASLAK APFWFDGQRM VWECLQGLNA EMAMREVEIH FALLIQRLPG IIELRYHDGT
PFADPATRAW ISASVLPHLQ TNNAPRKVEV TDTQPAWEVA LEAALLVLRK EGLKAAVQFL
KQGLQKAQGG RARFFWQFAL ARLCFVAKKY ELAKAQLETL DQTLQESGLH AWEPDLALEV
LHLLHSCCEL LPQNQVVRER KEEIYRRLCH LDLEVVLE
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