| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3987 |
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| Symbol | oprD |
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| ID | 1185663 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4492830 |
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| End bp | 4494176 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637395334 |
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| Product | porin D |
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| Protein accession | NP_793751 |
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| Protein GI | 28871132 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.286909 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGAGTGA TGAAGTGGAG CGCAATCGCA CTGGCCGTTA CGGCAGCCAG CACCCAACTG
GCAACAGCGG CACCTTTCGT CAGCGATCAG GCTGAGGCCA AGGGTTTCGT CGAAGGCAGC
ACGCTTGACC TGAAGTTGCG CAATTACTAC TACAACCGTG ACAGAAAGAA TAATCCCGCT
CCGGGCGGCC GTAGTGACAA AGACTGGACT CAGGGCATCT GGGCCAACTT CAGCACTGGC
TACACCCAAG GCACTATAGG TGTCGCCGCA GAGGCCTTCG GTTACGGCGC CCTCAGACTC
TGGGGTCCAG ACAAGTATTC GGGCTCGGGC AACCTGGTTA CCGACTCCAA TGGCGACAAC
GAAGCAACAC AAGGTAAATT TGGCGGTGCT GTGAAATTCC GCGTTTCGAA GACAGAGCTG
AAAGTGGGCG ACATGCAGCC GACCAGCCCT GTATTCGCAG TTGGCGGTTC GCGCATACTG
CCTCAGACCG CTAGCGGCCT GAGCCTGCAG AGCAGCGAGA TTGCCGGTCT TGACCTTGAA
GCTGGACATT TTTACTCAGG CACAAGCCAG GATGACACCA GCCACAACGG TAGCATCTGG
GCAACCTACG CCAATGGTTT TAATGGCCTG AAAGCTAATA GTGCGGATTT CCTGGGCGGT
AAATACGCAA TAACCGACGG CCTGGGCGTA GCTTTTTACG CAGCCAAGCT CGAAGATATC
TGGGATCAGT ACTACGGCAA CGTGAACTAC GCGCTGCCTC TGGGCAATGA CCAGTCCTTG
GCGTTTGACG TCAACCTTTA TCGCACACTT GACGAGGGTA GCTCCAAAGC TGACTCGATC
AACAACACTA CGTACTCAGC TTCGGCAGCC TATTCCTTCT TGGCAGCGCA CACCGTTACT
GTCGCGTATC AGAAGGTCGA CGGTGACACT CCATTCGACT ACATCGGCAT CGGCGACAAT
AATCGTGGTG GCGACTCTAT CTTCCTGGCC AACTCCGTTC AGTACTCTGA CTTCAACGGC
CCGGGCGAAA AGTCGTGGCA GATTCGCTAT GACCTGAACA TGACTCCTTA TGGCGTTCCT
GGCCTGAGCT TTATGACTCG CTACCTCAAT GGTGACAATA TTGACGGTAC CAAAGTGGAT
GCCTCCAGCC TGTACGCCAA CATGTACGGC GCAGACGGCA AACACCACGA AACCAACCTT
GAAGCTAAAT ATGTAGTTCA GGCTGGCCCG GCGAAAGATC TGTCCTTCCG CATGCGTCAA
GCCTGGCACC GCGGCAATGA TGCTCAGTCA GACGGCGACG TCAACGAGTT CCGCCTGATT
GTCGATTACC CGATCTCGAT CCTGTAA
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| Protein sequence | MRVMKWSAIA LAVTAASTQL ATAAPFVSDQ AEAKGFVEGS TLDLKLRNYY YNRDRKNNPA
PGGRSDKDWT QGIWANFSTG YTQGTIGVAA EAFGYGALRL WGPDKYSGSG NLVTDSNGDN
EATQGKFGGA VKFRVSKTEL KVGDMQPTSP VFAVGGSRIL PQTASGLSLQ SSEIAGLDLE
AGHFYSGTSQ DDTSHNGSIW ATYANGFNGL KANSADFLGG KYAITDGLGV AFYAAKLEDI
WDQYYGNVNY ALPLGNDQSL AFDVNLYRTL DEGSSKADSI NNTTYSASAA YSFLAAHTVT
VAYQKVDGDT PFDYIGIGDN NRGGDSIFLA NSVQYSDFNG PGEKSWQIRY DLNMTPYGVP
GLSFMTRYLN GDNIDGTKVD ASSLYANMYG ADGKHHETNL EAKYVVQAGP AKDLSFRMRQ
AWHRGNDAQS DGDVNEFRLI VDYPISIL
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