| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3488 |
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| Symbol | |
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| ID | 1185153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3936725 |
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| End bp | 3937750 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637394841 |
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| Product | sugar ABC transporter, permease protein |
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| Protein accession | NP_793268 |
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| Protein GI | 28870649 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.294731 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAACG CGATTCTGCA AAACAAGCCG GCCCTGGCGC CGACCGGAAA AAAAAGAAGG
CTGCCGACCG AGCTGAGTAT TTTTCTGGTG CTGATCGGTA TAGGCCTGAT CTTTGAACTG
TTCGGCTGGA TCGTTCGCGA TCAAAGCTTT CTGCTCAACT CCCAGCGTTT GGTACTGATG
ATTCTTCAGG TGTCGATCAT CGGCCTGCTC GCTATCGGCG TCACGCAGGT GATCATCACC
ACGGGCATCG ACCTGTCGTC CGGCTCGGTA TTGGCGTTGT CGGCGATGAT TGCCGCGAGT
CTGGCGCAGA CCTCGGATTT TTCCCGCGCG GTGTTTCCTT CGCTGACTGA CCTGCCCGTA
TGGATTCCGA TCGTGGTCGG GCTCGGGGTG GGGTTGCTGG CCGGCGCCAT CAACGGCAGC
ATCATCGCGA TCACCGGCAT CCCGCCCTTC ATCGCCACAT TGGGCATGAT GGTCTCTGCA
CGCGGCCTGG CACGCTTCTA CACCGAAGGC CAGCCGGTGA GCATGCTCTC TGATTCCTAC
ACGGCCATTG GCCAGGGCGC GATGCCGGTC ATCATCTTTC TGGTGGTGGC GGTCATTTTC
CACATTGCGC TGCGCTACAC CAAGTACGGC AAATATACCT ACGCCATTGG TGGCAACATG
CAGGCGGCGC GCACCTCGGG GATCAACGTC AAGCGTCACC TGATCATTGT CTACAGCATC
GCCGGGCTGC TGGCCGGATT GGCAGGCGTG GTTGCCTCGG CGCGAGCCGC AACCGGCCAG
GCGGGCATGG GCATGTCCTA TGAGCTGGAT GCGATCGCGG CGGCAGTCAT CGGCGGCACC
AGCCTGGCGG GCGGCGTCGG GCGAATTACC GGCACGGTCA TCGGTGCGCT GATTCTCGGG
GTAATGGCCA GCGGCTTCAC GTTTGTTGGC GTGGACGCCT ACGTTCAGGA CATCATCAAG
GGTCTGATCA TTGTGGCGGC GGTGGTAATC GATCAATATC GCAACAAGCG CAAGACCAAG
CGCTGA
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| Protein sequence | MSNAILQNKP ALAPTGKKRR LPTELSIFLV LIGIGLIFEL FGWIVRDQSF LLNSQRLVLM
ILQVSIIGLL AIGVTQVIIT TGIDLSSGSV LALSAMIAAS LAQTSDFSRA VFPSLTDLPV
WIPIVVGLGV GLLAGAINGS IIAITGIPPF IATLGMMVSA RGLARFYTEG QPVSMLSDSY
TAIGQGAMPV IIFLVVAVIF HIALRYTKYG KYTYAIGGNM QAARTSGINV KRHLIIVYSI
AGLLAGLAGV VASARAATGQ AGMGMSYELD AIAAAVIGGT SLAGGVGRIT GTVIGALILG
VMASGFTFVG VDAYVQDIIK GLIIVAAVVI DQYRNKRKTK R
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