Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3180 |
Symbol | |
ID | 1184837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3571732 |
End bp | 3572355 |
Gene Length | 624 bp |
Protein Length | 207 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637394535 |
Product | lipoprotein, putative |
Protein accession | NP_792969 |
Protein GI | 28870350 |
COG category | [S] Function unknown |
COG ID | [COG3009] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.131862 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCTTGC GCCTGAAACT GATGGTACTC GCCGCTGCAC TGGGCATGGG CGCCTGCACC TCGACGCAGA CCCACTATTA CACGCTGATC GCACCGATGG GCGCGACCGG CAGCGCAGCA GCCAGACCCG CGCCGTTCCA GTTTGAAATG CTCCCGGTGA TCATGCCGGT GCAGGTCGAC CAGCCGCCCC TGGTGGTCCG TCAGGGCAAC GGTAGCCTGG CGATTCTGGA CACCGAACGC TGGGGATCGC CACTGGGCGA CGAATTTCAC GACGCGCTGA CCCCGCAACT GGAGCGTCGA TTCGGTAGCC GCGACATGGC CGGCCTGCCG AAAAACGGCG ACCAGCCTGT GCTTTCGGTT CGCACGGACG TACGCCGCTT CGAGTCGATG CCCGGCCATT ACGCCCTCAT CGATGTGGTG TGGACACTGG GGCTACGCGA TGCAGGCGCT ACCGCAGGCA GCAAAAGGCA AAGCCTGACC TGCAGCAGCG TGATCCGCGA GCAGGCTGCA GAAGGCATGG AAAACCTGAT TCTTGCCCAC CAGAAAGCGG TTGCAACCTT GGCTGAAAAG ATCGCAGCCA CGGCGGCAAG CTGGGCGGCA CAACCCTCCT CGCGCTGCCT TTGA
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Protein sequence | MTLRLKLMVL AAALGMGACT STQTHYYTLI APMGATGSAA ARPAPFQFEM LPVIMPVQVD QPPLVVRQGN GSLAILDTER WGSPLGDEFH DALTPQLERR FGSRDMAGLP KNGDQPVLSV RTDVRRFESM PGHYALIDVV WTLGLRDAGA TAGSKRQSLT CSSVIREQAA EGMENLILAH QKAVATLAEK IAATAASWAA QPSSRCL
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