| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3144 |
|---|
| Symbol | |
|---|
| ID | 1184801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3531672 |
|---|
| End bp | 3532976 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637394502 |
|---|
| Product | sigma-54 dependent transcriptional regulator |
|---|
| Protein accession | NP_792936 |
|---|
| Protein GI | 28870317 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00844398 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGGAC TGGCCCCAAC GCAACGCCTG CTAATGATTG ACGGCGCAGA TGACTGTCAT
CCTTTGGTCA CTGTTTTAAA GGATGCCGGA TGGACGGTAC ACGACAAAAC GCTGGATTCT
GAGTCCGCCA CGGACTACGA CGTAGGCCTG ATTTACCTCA AGGCTGATCA TTTCGAACAC
CTGCGCGAAC TCGAAGAACG TTTTACCCGC AGCAACATGC GCTGGGTCGC CGTGTTGTCA
GCCAATGACC TGCGCCGCGA GAAAATCGGC GATTTTGTCT GCCGTTGGTT TTTCGATTTT
CACACCCTGC CGTTCGATGT AAATCGCCTC CAGGCCTCGC TCGAAAAAGC GCTGATTAAG
GTGGACCCCG CGCCACCGGC GTCCAGTGCC GGGCCCGAGC TGCTAGGCGA AAGCCGACCG
ATCCGTGAAC TGCGCAAGCT GTTGAGCAAG CTGGCACCCA TTGACTCGCC GGTGTTGATC
CGTGGCGAGC GCGGTGCCGG CAAAGAGTTG ATTGCACGCA GCCTGCATGC CCAGTCCCAG
CGCCGCGACA AACCCTTTGT GGTTGTCGAT TGCGCCGCGC TCGCCGAACA TTCGATCCAC
GCGGAGCTGT TCGGCGATGA CACTGGCTCC GCGCACGAGC GCAGCATCGG GCTGATCGAA
GCCGCGCACG GAGGTACGCT GTTGCTCGAT GAAGTCGGCG ATCTGCCGCT GGACACTCAG
GCTGACCTGC TGCGCTTTCT GGAGGAGCGC AAAATCGAAC GGCCGGGCGA CAAAGAGCCG
ATAGCGGTTG ACGTTCGGGT AGTGGCCGCG ACCCGTGAGG ACCTTGAAAC AGCAGTGCGC
AAAAAGCGTT TCCGCGAGGA TTTGTATTAC CAACTGAGCG TCCTGCAGGT GGGTATTGCG
CCACTGCGTG AACGTCATGG TGATCTGGTT TTGCTGGCCA ACCATTTCGC CCATGTGTTC
AGCCAGGAAA CCGGCAGGCG AGCGCGCAGT TTCAGTCAGG ACGCGCTGGT TGCGCTGGGC
AAGCACGACT GGCCGGGCAA TGTGCGCGAG CTGGCCAGCC GGGTGCGGCG CGGGTTGGTG
CTGGCCGAAG GCAAGCAGAT AGAAGCAGCT AACCTGGGTT TGCTGGGCGA AGAGGATGTT
GCCGGGAGCA TGGGCACGCT GGAAGAGTAC AAGTCCCGTG CCGAGCGGCA GGCGTTGTGC
GATGTGCTGA CGCGCCACAG TGACAACCTC AGTGTGGCGG CCAAAGTACT GGGCATCTCG
CGGCCAACGT TCTATCGGCT GTTACACAAG CACCAGATCC GCTGA
|
|---|
| Protein sequence | MHGLAPTQRL LMIDGADDCH PLVTVLKDAG WTVHDKTLDS ESATDYDVGL IYLKADHFEH
LRELEERFTR SNMRWVAVLS ANDLRREKIG DFVCRWFFDF HTLPFDVNRL QASLEKALIK
VDPAPPASSA GPELLGESRP IRELRKLLSK LAPIDSPVLI RGERGAGKEL IARSLHAQSQ
RRDKPFVVVD CAALAEHSIH AELFGDDTGS AHERSIGLIE AAHGGTLLLD EVGDLPLDTQ
ADLLRFLEER KIERPGDKEP IAVDVRVVAA TREDLETAVR KKRFREDLYY QLSVLQVGIA
PLRERHGDLV LLANHFAHVF SQETGRRARS FSQDALVALG KHDWPGNVRE LASRVRRGLV
LAEGKQIEAA NLGLLGEEDV AGSMGTLEEY KSRAERQALC DVLTRHSDNL SVAAKVLGIS
RPTFYRLLHK HQIR
|
|---|
| |