Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0927 |
Symbol | |
ID | 1182556 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1007206 |
End bp | 1007634 |
Gene Length | 429 bp |
Protein Length | 142 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637392304 |
Product | type IV pilus biogenesis protein |
Protein accession | NP_790766 |
Protein GI | 28868147 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4968] Tfp pilus assembly protein PilE |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATGCAC AAAAAGGTTT TACACTGATT GAACTGATGA TCGTAGTTGC GATTGTTGGT ATCTTGGCGG CGGTAGCGAT TCCGTCATAT CAGAACTACG CAAAAAAAGC TGCGTATACC GAGGTTCTGG CTGCAATGGC CTCCGTCAAA ACTGCTGTGG GTGTGTGCGC TGCTCAACAA GGTACCGTTG CTGACTGTGA CACTGCAGCT AAAGTAGGTG TAACATTGCC TTCAGGTGCT ACTACCGGAG CAGTCAATAA GATGGAAATA ACTGCCACCA GCGCTGCTAT TACTGCTACT CCGAACGCAT TTAAAGGTAT CCTGACTACC GATACCTGTA GTCTAACGCC TGCTATAGCA GCTGCTGGAT CTCCGGTAAC TTGGAGCTAC ACAGGTGCAT GTGTAACCAA TGGCTATGTT AAAAACTAA
|
Protein sequence | MNAQKGFTLI ELMIVVAIVG ILAAVAIPSY QNYAKKAAYT EVLAAMASVK TAVGVCAAQQ GTVADCDTAA KVGVTLPSGA TTGAVNKMEI TATSAAITAT PNAFKGILTT DTCSLTPAIA AAGSPVTWSY TGACVTNGYV KN
|
| |