Gene SO_4106 details

Gene Information

• Locus tag: SO_4106
• Symbol: mshB
• ID: 1171719
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 4264394
• End bp: 4265011
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637345839
• Product: MSHA pilin protein MshB
• Protein accession: NP_719636
• Protein GI: 24375593
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGACGA AGCAAAATGG TTTTTCATTG ATTGAACTGG TCATAGTGAT CGTCATTTTG 
GGTTTGTTAG CGGCAACAGC GATCCCACGG TTTTTAAATG TCACTGACGA TGCTGAAGAT 
GCCAGTGTGG ACGGTGTGGC TGGTGGTTTA TCGACTGCGG TGAGTTTTGT GCGCTCACAA 
TGGGAAGTCG ACGGTCGCCA AAATAGCAGT GTGATCTTAG ACGGTACCTC AGTATCCCTC 
GACCCACGTT TTGGTTATCC CACGGGGACA TCGGGTACCG ATGCTACAGC CATGACAGAT 
GCAAGCTGTC AGCAGGTATT TAATACGGTA CTGCAAAGTG CACCGCGTAA CGTATTGTAT 
TCTCAAGATG CGCGTAATCA ACGCTATACA GTGCGTGTGA TTGATGGCGC AGGTGGCAGT 
GCTAATTCGA TTACCGGAGC AGCCGTGAGT GGTTTGGATT TATGTGTTTA TCACCAAGTA 
GCCTCACTAG TGTTAAACCA AACCACGGGT GTACCCTCTC CAGCCCCTGA CTTATCTACC 
ACAGGAGCTA AAGGGGTGGT TTATAATCCA GGTACGGGTA AAGTATTAAG CTTCACTCAA 
ACACCATTTA CGCCTTAA 

 

Protein sequence

MKTKQNGFSL IELVIVIVIL GLLAATAIPR FLNVTDDAED ASVDGVAGGL STAVSFVRSQ 
WEVDGRQNSS VILDGTSVSL DPRFGYPTGT SGTDATAMTD ASCQQVFNTV LQSAPRNVLY 
SQDARNQRYT VRVIDGAGGS ANSITGAAVS GLDLCVYHQV ASLVLNQTTG VPSPAPDLST 
TGAKGVVYNP GTGKVLSFTQ TPFTP