Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1580 |
Symbol | |
ID | 1169383 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 1656634 |
End bp | 1658847 |
Gene Length | 2214 bp |
Protein Length | 737 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637343499 |
Product | TonB-dependent heme receptor |
Protein accession | NP_717193 |
Protein GI | 24373150 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein [TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGGTATC AACCTAAGAT AGGGATATCT AAAACAATGA TTGGGTGTTT AGGCTTATGT GCGTTACCTG CCTTGCCACT TAATGCCAAA GAAGTATTAG GTGCGCCTAA AGTCGAGCCA ATTGAGATCT TAACGGTCCA TGGTCAGCAA TATCGTCGGG CGACGACCAT GACTAAGCCG GGAGAAGCGA TCATCTCGAT GGCTGAAATT GAAGAGATGC AAGCGACCAC ATTTGCCGAG GTCATTGATG ATATGGCGGG AGCCCATATT GATGGTGGCA CCCGCAGCGG TGGCGAGCGT ATCAATGTGT GGGGATTTGG TGAAACCGAA GATTTTAACG TTTATGTGGA TAATGCCCCC GTGGGGTTTG AGCAATATCG TTATGGGTCG TTTTTCTTAG ATCCGGATTT AATTAAACGG GTAGAAGTGA TTAAGGGCGC CCACGATGTT CGTTCTGGCA ACGGCGGTTT TGGTGGCGCT ATGTATGTTG TCACTAAATC GGCGGATGAT TTTTTAAAAT ATGACCAAAG TGTTGGTGCT AGGGTTAAAG CCAGTTACGC CAGTAATAAC GACGCCCAAA GCTATACGGG AACGGTTTAT GGACGAGCCA ATCAACAACT TTCTGGCTTA TTGCATTTCA CCCGTCGCGA TGCGCAAGAT GTGACGCTCG CCAATGGCGA AGCATTCGAA TACTCAGGTT ATGAGCAAAA TAATTACCTA GGTAAAGTTG ATTATGAGCA GGGCGATCAT CAACTTATGC TAAGCGTGAC CCATTATTTG GATGAAGGTC GTAAGCCTTG GGCCAATCGT CGTGGACCCA TGCCCGCGAT TTCTGACTTT AATATTCGTA AATACGGTTC TTATGAACAG GCACTTTATG CCACAACGGC CTACAACACC TATGAAGACA ATACTTGGTC GGCCAATTAC CGTTACTCAC CCAGCAATCC GTTGATTGAT ACACAAATTG TAGTGTCCCA TTCTGCCAAT GCGCGGCATT GGATTCGCCC GCCGATTGCT TGGGAGAAAA TGACGGTATC GGTGGGCAAT TTCGGCCATG AATCTTGGTT GGATTACAAA CGTGATTATA TCGACATCAA TAACTTAAGT GTTGTTGGTG CCCATGAAAT TACCGCAGGA TTGCAGTTTC GGAGTCTCGA TAGGACTTCA TTAGTCTTTA ATAAAAGCTA TGAGAAAAAT CCTGAGAAAA ACTTCGGCTG GTATACTCCT TATTATCAGC CTGAGGGACG TCAAGATACT TATGCGGCCT ATCTGCGAGA TGCGATAAGC CTAACAGATG ATCTGACCAT AACCCCTTCA TTACGATATG ATTTTGTCTA CAGTGTTGGT AAGCCTAATA TTGCCCCCGA CTATAATGAT ATTGCTGCTG GGCATGATTA TAGTTCGACT CACCACTCAG GCTTTTCACC AAGATTGGGC GTGGATTACC AATTAACACC CAATACCCGA GTGAATTTTG ATTACGCTTA CAGTTTACAG GCGCCTGTTG TCGATGAAAT TTATGCGGTG CAATATGCCA AGGCCAGCAT TACGGCCACG AGCCGCGATA TCGAGGTTGA GCGTTTACAT GCCTTTAAAT TGGGCTTGAT TAACCAGCAA ACCGATCTTT TTGCCGATCA AGATGCGCTT TCAACCCAAA TCACCGTATA CGCTAACCTT GGACGCGATG ATATTGCCCA GCGCCGTGGG GCGAAGTCCG ATCCAAATCA AGCCATACAA AGCGGCTATA CCAATCTGGA TGGTTATGAA ATTTACGGTG CCGATCTGGA GTCTCAATAC CGTTATCAAG ACTTTTTCAG TGATTTAGCC GTATCTTGGT TACAAGGAGA GCATCGTGGC TCACTGAAAG ACAGCTTAGG TGAAGACGAA TACTTAGCTA ATATTGCCCC ATTAGATATT CAACTCCGTG TGGGTATGTA TATTACCGAT TCCATTTCAG TGGCTTGGCA GGGCACTTGG TATGATGCAC AGGATAATGT GCCTGAAGGT GATATTTTTA ATGCAGAATC CCCAAGTGAG AATTACTTTC TACAAAATAT ATACCTAGCC TATGAACCCC TCGATAGTTT AAAAGGGCTG AGTATACGTT TAATGGCAAA AAATCTCACA AATCAGCAGG TGACGCCGTT TTTATCGGAC GGTATTCCCG CCCCCGGACG TGATGTCAGA CTTAGCTTAG CCTATGAGTT TTAA
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Protein sequence | MGYQPKIGIS KTMIGCLGLC ALPALPLNAK EVLGAPKVEP IEILTVHGQQ YRRATTMTKP GEAIISMAEI EEMQATTFAE VIDDMAGAHI DGGTRSGGER INVWGFGETE DFNVYVDNAP VGFEQYRYGS FFLDPDLIKR VEVIKGAHDV RSGNGGFGGA MYVVTKSADD FLKYDQSVGA RVKASYASNN DAQSYTGTVY GRANQQLSGL LHFTRRDAQD VTLANGEAFE YSGYEQNNYL GKVDYEQGDH QLMLSVTHYL DEGRKPWANR RGPMPAISDF NIRKYGSYEQ ALYATTAYNT YEDNTWSANY RYSPSNPLID TQIVVSHSAN ARHWIRPPIA WEKMTVSVGN FGHESWLDYK RDYIDINNLS VVGAHEITAG LQFRSLDRTS LVFNKSYEKN PEKNFGWYTP YYQPEGRQDT YAAYLRDAIS LTDDLTITPS LRYDFVYSVG KPNIAPDYND IAAGHDYSST HHSGFSPRLG VDYQLTPNTR VNFDYAYSLQ APVVDEIYAV QYAKASITAT SRDIEVERLH AFKLGLINQQ TDLFADQDAL STQITVYANL GRDDIAQRRG AKSDPNQAIQ SGYTNLDGYE IYGADLESQY RYQDFFSDLA VSWLQGEHRG SLKDSLGEDE YLANIAPLDI QLRVGMYITD SISVAWQGTW YDAQDNVPEG DIFNAESPSE NYFLQNIYLA YEPLDSLKGL SIRLMAKNLT NQQVTPFLSD GIPAPGRDVR LSLAYEF
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