Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_0344 |
Symbol | prpC |
ID | 1168221 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 350228 |
End bp | 351355 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637342348 |
Product | methylcitrate synthase |
Protein accession | NP_715984 |
Protein GI | 24371942 |
COG category | [C] Energy production and conversion |
COG ID | [COG0372] Citrate synthase |
TIGRFAM ID | [TIGR01800] 2-methylcitrate synthase/citrate synthase II |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGACG CAAAAAAATT AACGGGTGCA GGATTACGTG GCCAAAGCGC GGGTGAGACT GCACTAAGTA CTGTAGGTGT ATCGGGCAGC GGCCTGACCT ACCGCGGTTA CGATGTGAAG GATCTGGCCG AAAACGCCAC CTTCGAAGAA GTCGCTTACC TCATCCTCTA CGGCGAATTA CCCACCACAG CACAACTTGC GGCCTATAAA ACCAAACTCA AAGGCATGCG CGGCCTACCA CAGGCATTAA AAGAAGTGTT AGAGCGCATT CCTGCCGACG CCCATCCAAT GGATGTGATG CGTACCGGTT GCTCTATGCT GGGTAACCTC GAAGCTGAGC ACAGCTTTAG CGAGCAAAGC CAAATTGCCG ACCGTTTACT GGCGGCCTTC CCATCGATTA TCTGCTACTG GTATCGCTTT AGCCACGATG GCGTACGTAT CGACACCGAA ACCGATGACG ATCAAATCGG CGCCCATTTC TTACACCTGC TGCACGGCAA AGCGCCTTCT GCCCTGCACA CCAAAGTAAT GGACGTTTCG TTAATTCTGT ATGCAGAGCA TGAGTTTAAT GCTTCAACCT TCACCGCTCG TGTGTGTGCA TCGACGTTAT CGGATATGCA TTCTTGCGTG ACTGGCGCAA TCGGTTCACT ACGTGGCCCA CTGCATGGCG GCGCCAACGA AGCGGCGATG GAACTGATCC AAGATATGAA AGACGAAGCC GATGCCCGCG ATGTGCTCAT GGGTAAACTC GAGCGCAAAG AAAAGATTAT GGGCTTTGGT CACGCCATCT ACCGTGACTC AGACCCACGT AACGCCATCA TCAAAGAATG GTCAGAAAAA CTGGCAGCAG ATTATGGCGA TGATCGCCTC TATCGCGTAT CGGTCGCCTG TGAAGCACTA ATGTGGGAAC AGAAAAAACT TTTCTGCAAC GCCGACTTCT TCCATGCCAG TGCTTACCAC TTTATGGGCA TTCCAACCAA GCTGTTTACT CCAATCTTCG TTTGTTCACG GGTAACGGGT TGGACGGCAC ATGTGATGGA GCAGCGCTCA AACAACCGCA TCATTCGTCC AAGTGCCGAT TATGTGGGTG TATCGCCACG CAAAGTGATC CCCATTGCCA ACCGTTAA
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Protein sequence | MSDAKKLTGA GLRGQSAGET ALSTVGVSGS GLTYRGYDVK DLAENATFEE VAYLILYGEL PTTAQLAAYK TKLKGMRGLP QALKEVLERI PADAHPMDVM RTGCSMLGNL EAEHSFSEQS QIADRLLAAF PSIICYWYRF SHDGVRIDTE TDDDQIGAHF LHLLHGKAPS ALHTKVMDVS LILYAEHEFN ASTFTARVCA STLSDMHSCV TGAIGSLRGP LHGGANEAAM ELIQDMKDEA DARDVLMGKL ERKEKIMGFG HAIYRDSDPR NAIIKEWSEK LAADYGDDRL YRVSVACEAL MWEQKKLFCN ADFFHASAYH FMGIPTKLFT PIFVCSRVTG WTAHVMEQRS NNRIIRPSAD YVGVSPRKVI PIANR
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