| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0047 |
|---|
| Symbol | |
|---|
| ID | 1167946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 53199 |
|---|
| End bp | 54407 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637342061 |
|---|
| Product | carboxyl-terminal protease, putative |
|---|
| Protein accession | NP_715689 |
|---|
| Protein GI | 24371647 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACATC TACTCCGCAA TATCGCCAGT CTTGGACTCG GCCTAAGCTT AGGCCTGTCT
ATTAGCCTAT CCAGTCAAGA GAATACCAAG TCGTATCGAA GTGACTTTGA TTACCCGCTA
TTGCAGGATG TGCTCGAAAC GGTCGAAACC TATTACGTTA AAACTGTGAC TAAGGATGAG
CTTGTTCAAG CGGCAATTAA AGGCATCTTT GAGCATTTAG ATCCCTATTC AAGCTTTCTA
AATCACCAAG AATTACTCGA TCTAAAAGAT TCAAATCGGG GTGAGTACTT CGGCTTTGGC
TTTGAAGTCG CCAGCGAAAA AGACCATATC AGCATCATTG CCCCCTTTGC GAACTCCCCA
GCCGAACAGG CTGGGATTCA AGCCGGTGAC ATCATTATCA AGCTGAATAA CACCCCCACG
ACAGAAACTA ACCTTGCGGA TATTCTTAAC CAAATCAAGC AACACAGTTT GAGTCATCAA
AGTATTCGCC TCACGCTAAA ACACCGTAAT GACGAAGCAG AATTTGAGGT GATGTTAAAA
CCTAGCACAA TCACAATTCA GTCGGTCGCG AGCAAATTAT TGGATGGGAA CATTGGCTAC
GTAAGGCTCA GCAGCTTTCA AGAAGACTCT ACCGAAGATA TGGTACGCAC CCTGAGCCAA
TGGCAAGGCA CTCAGTTAAC GGGCTTGATA TTGGACCTAC GCAATAATCC CGGCGGCCTG
CTCGATCAGG CAATTAATAT TGCCGACCTC TTTTTGGCAA AAGGGCGAAT CGTCTCCACC
TCTGGCCGTT TTTTTGATGC CAATTCAGAC TATTACGCCT CACCGCAAAC CATGCTCGCC
AACGTACCCA TGCTAGTGCT AATCAATAAA GGCTCCGCAT CAGCATCAGA AGTACTGGCC
GCCGCATTGC AAGAAAATGG CCGGGCAAAA CTCCTAGGCG AAACCAGCTT TGGTAAAGGA
ACAGTGCAAA GCCTTATTCC TATTCTTAAC AACGGCAATG CGGTCAAACT GACCATAGCC
CAGTACAACA CGCCTAAAGG GGAGAATATC CACGACATAG GGATTAAGCC CGACATCAAA
GTAGTCTCCG AAACTGGCTC CAATCAAAAG AATATGCCTA TAATCGACGC TATCTCTGCA
CGAACCGATG TCAGCCAAGA CACGATTGTC ACTTCAGCTA TCACTTGGAT GCAACATCAT
GACGAATAA
|
|---|
| Protein sequence | MKHLLRNIAS LGLGLSLGLS ISLSSQENTK SYRSDFDYPL LQDVLETVET YYVKTVTKDE
LVQAAIKGIF EHLDPYSSFL NHQELLDLKD SNRGEYFGFG FEVASEKDHI SIIAPFANSP
AEQAGIQAGD IIIKLNNTPT TETNLADILN QIKQHSLSHQ SIRLTLKHRN DEAEFEVMLK
PSTITIQSVA SKLLDGNIGY VRLSSFQEDS TEDMVRTLSQ WQGTQLTGLI LDLRNNPGGL
LDQAINIADL FLAKGRIVST SGRFFDANSD YYASPQTMLA NVPMLVLINK GSASASEVLA
AALQENGRAK LLGETSFGKG TVQSLIPILN NGNAVKLTIA QYNTPKGENI HDIGIKPDIK
VVSETGSNQK NMPIIDAISA RTDVSQDTIV TSAITWMQHH DE
|
|---|
| |