Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_4275 |
Symbol | |
ID | 3523063 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 4505631 |
End bp | 4507214 |
Gene Length | 1584 bp |
Protein Length | 527 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 637286716 |
Product | TPR domain/sulfotransferase domain-containing protein |
Protein accession | YP_270925 |
Protein GI | 71282588 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTAGCA CAATAAAAGT ATTACACCAG CAAGCACAAC AAGCCTTAAA TCAAGGTTTG TATCAACAGG CACACCAACA TTTAATTTCA ATTTTACAGC AAGATAAGTA TTTTGCTGAC GCCTATTTTT TATTAGCTAT GATTGCCAGT GCCCATCATA ATTTGGCAAA AGCAATTGAA TTAATTAAAC AAGCTAATAG TCTTGCTCCT AATAACCCTG AGTATTTATC ACAACTTGCC AAACATTATG CGCTCGAAAA TAATCATGTT GAAGCACTGT ACTTTGCAGA ACTTGCCGCT AAGTTAATTG CTCAATTAAC GGTTCAATCC TCACTAACCT TAGATACGCT TGGCGTAGCG TATAGTCAAA TGGGATTGCA TGAAAAAGCC GTTAAATTTT TTAAAAAATC AGTCGCTATT AATGACAGAA ATCCAAATTA CTTTTTTAAT TTAGGTGCTT CATTAAAATT CATTGGTGAC TTTGAGGGGG CTAGAAAAGC CTATAAAAAA ACTATTTCAA TGGCGCCCAA TTATTACAAA GCACATTCAG CATTGACGGG TTTAGGCGGA ATATCAGAAG ACTACAATCA TATTCCTCTA CTTGAGCGAT TATTTAAGCA AACGCAACAT GCGGACGACA GGTTACATAT AGGCCACGCT CTAGCACGTG AATATGAAGC CTTAGAAGAT TTTGACAAAG CATTTTACTA CTTGGAAACA GCTAAAAAAT TCAAACTTGA ACAATTGAAG TACAACATTG ATGAAGACAA AACGCTGTTC AAGAGTCTTG CAAGCCACTT TAAAGACAGC AAGTATTCCC TATCTCAAGG CTTCGAAACA GATGAAGCAA TATTTGTCGT GGGCATGCCA AGATCAGGTA CCACCTTGGT TGAACGAATC ATTTCACAAC ATACTGACGT AACTAGTGCA GGGGAGTTGC AACACTTTGG TTTATTAGTT AAAAAGATGA CTAAAACCAC TAGTAATCGT GTGATCGATG CAGAGACGGT AACAGCAACA AAAGATATAA ATTTTAAAGC GTTAGGTAAA GCGTATATTG AAAGTACGAG AGCGATAACG GGTAAAACAG CAAGGTTTGT CGATAAGATG CCATTAAATG TACTTTATGT TGGTTTTATC CTACAAGCAT TACCCAAGGC AAAAATCATC TGCTTGGATA GAAACCCATT GGACACTATT GTGAGTAATT TCAGACAGCT TTTTTCTGTT AATCAATCGT ACTACAGTTA TGCGTATGAT CTGCAAACTA CGACAGAATT CTATTTGTTA TTCAAACAAC TCGCGGAATT GTGGTTAGCA CTTTTTCCTG ACAATTTTTA TTTAATTAAT TATGAGAAAT TGGTTAACGA TCCTATCAAT GAAGCTAAGC AGCTTATTGA GTTTTGTGAT CTTTCTTGGC AAGAACAATG TGTTGATATT CATCAAAACT CAGCACCCGT TGCGACTGCT AGCGCGCTAC AAGTACGTAG TCCTATTAAT AATCGTTCAG TAGATAACTG GAAAAAATAC GATGCTTATC TTGATGGTGT AAAAAAGAGT TTAGCCACTA AGGTCGATAC TTAA
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Protein sequence | MSSTIKVLHQ QAQQALNQGL YQQAHQHLIS ILQQDKYFAD AYFLLAMIAS AHHNLAKAIE LIKQANSLAP NNPEYLSQLA KHYALENNHV EALYFAELAA KLIAQLTVQS SLTLDTLGVA YSQMGLHEKA VKFFKKSVAI NDRNPNYFFN LGASLKFIGD FEGARKAYKK TISMAPNYYK AHSALTGLGG ISEDYNHIPL LERLFKQTQH ADDRLHIGHA LAREYEALED FDKAFYYLET AKKFKLEQLK YNIDEDKTLF KSLASHFKDS KYSLSQGFET DEAIFVVGMP RSGTTLVERI ISQHTDVTSA GELQHFGLLV KKMTKTTSNR VIDAETVTAT KDINFKALGK AYIESTRAIT GKTARFVDKM PLNVLYVGFI LQALPKAKII CLDRNPLDTI VSNFRQLFSV NQSYYSYAYD LQTTTEFYLL FKQLAELWLA LFPDNFYLIN YEKLVNDPIN EAKQLIEFCD LSWQEQCVDI HQNSAPVATA SALQVRSPIN NRSVDNWKKY DAYLDGVKKS LATKVDT
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