| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2917 |
|---|
| Symbol | |
|---|
| ID | 3521487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 3050704 |
|---|
| End bp | 3051951 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637285370 |
|---|
| Product | phage integrase family site specific recombinase |
|---|
| Protein accession | YP_269617 |
|---|
| Protein GI | 71281018 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.121366 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAGAA AAGTAAAACC TCTTACCAAT ACTGAAGTTA AGCAGGCAAA GCCTAAAGAT
AAGATTTACA AGTTATCTGA CGGCGATGGC TTACAATTGC GCATAATGCC AAATGGCTCT
AAACAATGGC TGTTAGACTA CTTCAAACCT TACACAAAAA AACGTACCTC ATTCAGCTTA
GGATCATACC CTGATGTTAC ATTAGCCAAT GCAAGAGCCA AGCGTGCATC TTCAAGAGAA
CTTTTAGCTC AAGACATCGA CCCCAAAGAA CATAAAGAAG ACCACCACCG TGAACAATTG
CTTATCGCTA GCCACACTTT AAAGAGTGTT GCTGAAGATT GGTTTGCCAT CAAAAAGACC
ACGATTACAG AAGTTACTGC TAAAAGCCTA TGGCGTAAGT TTGAAAACCA CGTTTTTCCA
AAGCTAGGCC ACAGGCCAAT AGACAAAATA TTAGCACCAG AGGCTATTGA AGCACTTAAG
CCTTTAGCTG CTAAAGGTAA CCTAGAAACA ACAGGTAAAA TCATTGGCCA TTTAAACAAC
ATAATGACCC ATGCCGTAAA TACGGGGATA TTACATCACA ATCCGTTATC AGGGATTCGT
AGCGCATTCT CAGCCCCTAA AGTAACTAAT ATGCCCACCA TTAAGCCTAA TGAATTAGGT
AAGCTAATGA AGGTCATCAG TTACGCCAGC ATTAAGCTAG TCACCAGATG TTTAATTGAG
TGGCAACTTC ACACAATGAC CAGGCCCAGC GAAAGCGCTA AAGCTGAGTG GTCAGAAATA
GATTTAGAGA ATAGATTATG GGTTATTCCT GCTGAACGTA TGAAAATGAG ATTAGAGCAT
AAAGTACCAC TGACCAAACA ATCCATTGAA ATACTTGAAC GATTAAAGCC AATTACAGGC
CATCGAACAC ACCTATTCCC TTCCCACATT AATCACCATA AACACTGCAA CGTTGAAACA
GCAAACAAAG CATTAATACG TATGGGCTAT AAAAACAGAT TAGTCGCTCA TGGCTTACGT
GCTTTAGCTA GCACTACTTT AAACGAACAA GAGTTTAATG CTGATGTTAT CGAGTCTGCA
CTATCTCATG TCGATAAAAA TGAAGTTAGA CGTGCCTACA ATCGTGCAGA ATACCTTGAT
AGCAGGCGTG AACTAATGTG CTGGTGGAGT GAGCATATAG AGCAGGCAGT AAGTGGCAAC
TTACCTGTCT CAACGTTAAA AGAGCAAAAG ATAATCTGCA ACGAATGA
|
|---|
| Protein sequence | MARKVKPLTN TEVKQAKPKD KIYKLSDGDG LQLRIMPNGS KQWLLDYFKP YTKKRTSFSL
GSYPDVTLAN ARAKRASSRE LLAQDIDPKE HKEDHHREQL LIASHTLKSV AEDWFAIKKT
TITEVTAKSL WRKFENHVFP KLGHRPIDKI LAPEAIEALK PLAAKGNLET TGKIIGHLNN
IMTHAVNTGI LHHNPLSGIR SAFSAPKVTN MPTIKPNELG KLMKVISYAS IKLVTRCLIE
WQLHTMTRPS ESAKAEWSEI DLENRLWVIP AERMKMRLEH KVPLTKQSIE ILERLKPITG
HRTHLFPSHI NHHKHCNVET ANKALIRMGY KNRLVAHGLR ALASTTLNEQ EFNADVIESA
LSHVDKNEVR RAYNRAEYLD SRRELMCWWS EHIEQAVSGN LPVSTLKEQK IICNE
|
|---|
| |