Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS03674 |
Symbol | RSp0290 |
ID | 1222422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 376824 |
End bp | 378290 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637240150 |
Product | putative outer membrane CHANEL lipoprotein |
Protein accession | NP_521851 |
Protein GI | 17548511 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.119855 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCGGTA AGCCGAACCC ATGGATTGAA CGCGCGCGGT GGTGGCTGCT GCTGGGCAGC CTCTGCTGCG GGGGGGTCTC CACCCAGGCA TGGGGACACA GCCTCGGCGA CCTGGTGGAC GACCCGCTGT TCGCGCGGCC ACCGGTGCTC GACACGGGCG CCGTGCTGCC GTCCGACGCC CAGCCGATCC CCTGCCCGGC TTCCGGTGAC CTGGCGCACC CGCTCTCGCT GAGCGAAGCG GTGGACCTGG GGCTGTGCAA CAACCCGCAG GTCAAGGCGG CGTGGGCCGC CATCAAGATC CAGGCCGGCG CGGTCGGCGA AGCCCGGGCG GCCTATCTGC CGACGCTGAC GGGGTCGCTA TCGGCCATGC ACACGCGCAA CGAGTTTCCC GATCGGCCGG AAGCGAACTC GACCTCCAAT GGACATACCG TCTATCTCGG CCTCAGTTGG CGGCTGTTCG ATTTCGGTGC CCGCAGCGCG AACCGCGAAG CCGCCAACCT GCTGCTCGCG GCGGCCATCT CCGGGCACGA CGCCGCCCTG CAGAAGGTGC TGGCCTCGGT CGTCGGCGCG TACTTCGATG CGCTGACCCA GCAGGCCGCC ATGCAGGCCC GAACCGAGGC GACCCGCCTG GCGCGGGACA CCGTTGAAGC GACCGAGCGG CGCGAGCGCC GCGGCGCCGC CGGACAGAGC GACACCCTGC AGGCGCGCAC CGCGTTCGCC AAGGCGCAGC TGGCCGAACA GCGCGCCGTG GCGGATTTCC GCAAGGCGCT GTCGGCGCTC GCCTACGCCC TGGGCTTGCA GCCGGGCACG GCGTTCCAGC TGGCCGAGCT GAACGACGCG ACCGACAGCC AGTCCGTCGG CGAACTGGCG CGCTGGCTGG ATGAAGCCGC GGCCCGGCAT CCCGGCATTG CCTCGGCGCG CGCCCAGTGG GACGCGGCCA ACGCCCGGGT TGCCAAGACA CGCGCCGAAG GCCTGCCGAC CATCGACCTC ACCGCCAACT TCTATCAGAA CGGCTACCCG AACCAGGGCC TGCAGAGCAC GCGCAACAAC GTGAGCACGG TCGGCCTCAC CCTGACGATC CCGCTGTTCG AAGGCTTCGC CCGCACCTAC AAGATCCGCG GCGCCGAGGC CCAGGCCGAA CAAAGCGAGG CGCAGTACGA AGACACGAAG AACCAGATCC TGTCGGATGT GATCAAGGTG CACGCCGATG CCGTGGCGGC CGTCGACAAC CTGCGCGCCT CGGACGTGCT GATCCGGTCG GCCCAGGCGT CGATGGTGTC ATCGGAGAAG CGCTACGCCA AAGGAGCGGC GGATGTGCTG GAGCTGCTGT CGACGCAGTC CGCCCTGATG GACGCGATGC AGGAGCGCGT GCGGTGCCTG TCCGAGTGGC GCGCCGCGCG GCTGCGGCTG ATGGCCACCG CCGGGGTGCT GGGGCGGGAG CGGCTGGACA ATCCGCTGGT CCGCTGA
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Protein sequence | MSGKPNPWIE RARWWLLLGS LCCGGVSTQA WGHSLGDLVD DPLFARPPVL DTGAVLPSDA QPIPCPASGD LAHPLSLSEA VDLGLCNNPQ VKAAWAAIKI QAGAVGEARA AYLPTLTGSL SAMHTRNEFP DRPEANSTSN GHTVYLGLSW RLFDFGARSA NREAANLLLA AAISGHDAAL QKVLASVVGA YFDALTQQAA MQARTEATRL ARDTVEATER RERRGAAGQS DTLQARTAFA KAQLAEQRAV ADFRKALSAL AYALGLQPGT AFQLAELNDA TDSQSVGELA RWLDEAAARH PGIASARAQW DAANARVAKT RAEGLPTIDL TANFYQNGYP NQGLQSTRNN VSTVGLTLTI PLFEGFARTY KIRGAEAQAE QSEAQYEDTK NQILSDVIKV HADAVAAVDN LRASDVLIRS AQASMVSSEK RYAKGAADVL ELLSTQSALM DAMQERVRCL SEWRAARLRL MATAGVLGRE RLDNPLVR
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