Gene RS01961 details

Gene Information

• Locus tag: RS01961
• Symbol: RSp0747
• ID: 1223054
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003296
• Strand: +
• Start bp: 936244
• End bp: 938094
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637240607
• Product: hypothetical protein
• Protein accession: NP_522308
• Protein GI: 17548968
• COG category: [S] Function unknown
• COG ID: [COG3519] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03359] type VI secretion protein, VC_A0110 family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0957236
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAAGAGC TGCTGCCCTA TTACGAACGA GAACTGGCCT TCCTGCGCCG GTACTCGCGC 
GATTTCGCCG AGCGTTATCC GAAGATCGCT GGCCGGCTCG CCATGTCGGG CGACGGCTGC 
GACGATCCGC ACGTCGAGCG GATGATCGAG TCGTTCGCGC TGCTGAGCGC CCGCGTCAGC 
AAGAAGCTGG ACGACGACTA CCCCGAATTC ACCGAGGCGC TGCTGGAGGT CCTGTACCCC 
CATTACCTGC GTCCGTTCCC GTCGTGCTCC GTGGTGCATT TCGATGTGCG CGGCGCGGCG 
GCCCAGCTCA GCGCGCCGGT GCAGATTCCG CGTGGCACCT TCCTGACCTC GCGCGTGGTG 
CGCAAGGTCG AGTGCAGTTT CCGCACCGCT TACGACGTCA CCTTCGCGCC GGTGCGGATT 
GCCGCGGCCA CTTACGCGCG CGCCGTGTCC GCGCCGTCGG CGGTCAGTCT GCCCAAGGGG 
GCGACCGGTG CGATCGCGCT GACCCTGGAA TACGTTGGCG AGCGCGGCGG CTTCGAGTCC 
CTGCCGCTCG ACCGGCTGCG CGTCTACATG GACGGCGAGC CCTCGTTCGT GGCCGCGCTG 
GGGGATGCGC TGTTCCTGCA TACCGCGGGA ACCTACGTGG AGGGCGAGCG ACCGGGCGTG 
TGGACCGGCT TGTCCGGTGT GCCCCTGCAT GAGGTCGGCT TCGCGGAAGA CGAGGCGCTG 
ATCGACTGCC CGGCGCGCTC GCATCCGGCC TATCGGTTGC TGACCGAGCA CTTCAGTTTT 
GCCGAGAAAT TCAATTTCTT CGACATCGAC CTGGCAGCCG TGCGGCGCAG GCTGACGCCC 
GGCGTGCCGG TTCGCCGCCT GGTGCTGCAC CTGGTCCTGA AGGACGTGCG CAGCGACTCG 
CACGCTGCCC GCCTGCTCGA AGGCTTGCAG GCCGAACACC TGCGCCTGCA TTGCACGCCG 
GTGGTCAACC TGTTCCAGCA GAATGCCGAT CCGATCCGCA TCGAGCACAC CGCCAGCGCC 
TACCCGGTCG TGGCCGACAG CCGACGTGCG CACGGCTTCG ACATCTACTC GATCGACAAG 
GTGCACCTGG TGCGCGAGAC CGCCGCGCAC GAAGAGGTGA CCGAGTTCCG CCCGTTCTAC 
TCGCTGCACC ACGGCGAGGA GCCCGGGCAA GCGGGCCACT ACTGGATCGC CCGGCGCAAC 
GAGCTCGTGG CGCAGCGCAG CCCCGGCTTC GAGACTGAGA TCTCCATCGT CGATACCCGG 
TTCGATCCGG CCAGCCCGCA GACCGACACG CTGAGCCTGA CCGTCACCTG CACCAACCGC 
GATCTGCCGT CCACGCTGGC GTTCGGCCAG CCGGACGGCG ACCTGTCGAT GGAAGGCAAT 
TCCGTCGCTC GCGCCATCAT GTTGCTGCGC AAGCCGACGC CGTCGATGCG CCTGGGCGGC 
GGCCGCGCGG CGCAGTGGCG GCTGATTTCG ATGCTCTCGC TCAACCACCT GTCGCTGGTG 
CAGAACGGGC TGCCGACGCT CAAGGAGATG CTGCGCCTGC ATGATCTGCC GCATAGCGCC 
ATTTCGGCGC GGCAGATCGA GGGCGTGGTC GGCCTCGACT ACGCGCCGGC CACGCACTGG 
CTGGCCGGCA AGCCGTTCGC CACGTTTGTG CGGGGGCTGG AGATCCGGCT CACGCTGGAC 
GAAGACGCTT TCGTCGGCAC GGGCCTGCAT CGCTTCATCC GCGTGCTGGA CCACTTCTTC 
GGCCTGTACG TCCATATCAA CAGCTTTGTG CAGCTGATTG CGGTATCGCG CCGCAGCGGC 
AAGGAACTGG TCAGATGCGC ACCTCGCAGC GGCGAATCGA TCCTGGTGTG A 

 

Protein sequence

MEELLPYYER ELAFLRRYSR DFAERYPKIA GRLAMSGDGC DDPHVERMIE SFALLSARVS 
KKLDDDYPEF TEALLEVLYP HYLRPFPSCS VVHFDVRGAA AQLSAPVQIP RGTFLTSRVV 
RKVECSFRTA YDVTFAPVRI AAATYARAVS APSAVSLPKG ATGAIALTLE YVGERGGFES 
LPLDRLRVYM DGEPSFVAAL GDALFLHTAG TYVEGERPGV WTGLSGVPLH EVGFAEDEAL 
IDCPARSHPA YRLLTEHFSF AEKFNFFDID LAAVRRRLTP GVPVRRLVLH LVLKDVRSDS 
HAARLLEGLQ AEHLRLHCTP VVNLFQQNAD PIRIEHTASA YPVVADSRRA HGFDIYSIDK 
VHLVRETAAH EEVTEFRPFY SLHHGEEPGQ AGHYWIARRN ELVAQRSPGF ETEISIVDTR 
FDPASPQTDT LSLTVTCTNR DLPSTLAFGQ PDGDLSMEGN SVARAIMLLR KPTPSMRLGG 
GRAAQWRLIS MLSLNHLSLV QNGLPTLKEM LRLHDLPHSA ISARQIEGVV GLDYAPATHW 
LAGKPFATFV RGLEIRLTLD EDAFVGTGLH RFIRVLDHFF GLYVHINSFV QLIAVSRRSG 
KELVRCAPRS GESILV