| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00397 |
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| Symbol | RSp0518 |
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| ID | 1222825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 644184 |
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| End bp | 646910 |
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| Gene Length | 2727 bp |
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| Protein Length | 908 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637240378 |
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| Product | putative VGR-related protein |
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| Protein accession | NP_522079 |
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| Protein GI | 17548739 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.873856 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCTG ACGTGACTTC GATCCAACTG CCGTGCGCGC TCGCCCAGAA CCGCCGCGCC
ATGCGCCTGG ATTTCGGCCC TGCCGCAACC GCTGCGGCGC AAACGCTGGT GCCGCAGTAT
GCGGATATTC ATCAAGGCAT CTGCGCCGGC CTGGAGGCCC AGGTGGTTTG CCTGTCGGAG
CGCGCCGACC TGTCGCGTGA CGAGCTGCTC GGGCTGCCCG TATCGATCCA GGTGGCGACG
GATGGCGGCG CGCTGCATGC GATCAACGGC ATCGTTTCGG ACGTCCACAG CGGCGCATTC
GACGGAACCC TCGCCAGCTA CCGGTTGACG ATCATCGATG CCATGTCCTT GATGCGCAGG
CGCCGGAACA TGCGCATCTT CGTGGGCAAG AGCGTGCCCG ACATTCTGGG GATATTGCTG
GCCGAGTGGC AGCAGCGCAG CGCGATCCTG GGACAGGCGT TCCGCTTTCA ACTGCTGCTC
GACCGCAGCG GGTATCCCGT GCGCGCGCAG ACGCTGCAAT TGGATGAGTC CGACAGCGGC
TTCCTCGACC GCCTGACCCG GCGCGAAGGT ATGTTCTGCT TCGTCGTGGC GGGTACGCCC
GATGGCTCCG ACGGCGACAC GCCCGCGCAG ACGCTGGTGT TCTGCGACGA CCCGATGAAG
CTGCCGCAAG CGCAGGCCGG CGCCGTGCCC TTCCACTACG GCGCCGCCGT CAAGGCGCGC
GACTCGGTCA CCCGCTGGGG CGAGGCGCAC AGCCTGGTTT CCGGCACGAT CCGGGGCACC
AGCCCGGACT ATGAAACCGG CCGGGTGGAT CGGGTCGACG TGGACACGCT GCTCGATCTG
GGCAAGGCCG GCAACGACCT GGCGCGCCTG ATGACGGATG CGGCCGTCGA CCGGGCGCAC
GCGGGCGATT CGCGCGCAGA CTACGAACGC CAGGGCCGCT TGCGCATGCA GGCGCACGAG
CGACGCGCGG CGTACGTGCA TGCCGCAAGC GACGTGCGCA ACCTCACGCC CGGCTCCTGG
TTTGTGCTGA GCGGCCACCC GCTGGTGGAC AAGCGCGAAC CCGAGCAACG CGAGTTCGTC
GTCACCCGCC TGCGCCAGCG CATCGCCAAC AACTTCCCCA AGGCACTGAA CGAACAGGCG
CGGGCACTCG CCGAGGCCAG CGGCTGGCAT CTTGAGGTGC GCCCCGGCCG CGACGACGCA
CAGATACGCT ACGAAAACAC CTTCACTTGC GTGCCCCGTG GCGCACCGCT GACGCCCGAC
TATGACCCGC GCATCGACCT GCCGCGCACC GATCCGATGA CCGCCGTGGT CGTCGGCCCG
AACGGCCAGG AGGTGCACTG CGACGAGCTG GGCCGCTACA AGCTGCAATT CGTGGGGCTG
TACGCCGAAG ACCATGCGCA CGCCCAGGGC GCGGGCACCA GCGGGACCGA ACGGGACAGC
GCCTGGGTGC GGGCCGGCAA CCTCTGGGCG GGGCAACGCT ACGGCATCAA CCTGCCCTTG
CGCGCGGGGA TGGAAGTGCT TGTCGCTTTC GCCAACGGCG ACCCTGACAG GCCCTACATC
GCAACGGTGC TGCCGGGCCA CAACAACATG CCGACCGCCT TCAACGACAC GGGCGCACTG
CCGGACAACA AGCACCTCAG CGGCATCAAG ACAAAGGAAG TGGACGGCTC CGGCTTTAAC
CAAGTGGCCT TCGACGACAC GCCGGGCGAG ATCAGCAGCC AGCTTGCCAG CACGCATGCG
GCCAGCCAAC TGAGCCTGGG CTACCTGACC CACCCGCGCG ACCAGGGCAA GGCCGAGCCG
CGCGGCGAAG GGGCGGCCAT CACCACCCAG GCCATGGCGA GCATGCACGG CAACCAGGGC
ATGCTGCTGT CCACGGAACG GCGCTCGCAG GCCGGCAACC AGATGGACCG CGATGGGCTG
CTGGGCTTGG CGCAGGCGTT CGCCTCAGTC GCCGCTGAAT TCGGCAAGAT GGCGGCCACC
CATCACGCCG GCACCTATGA CCCGGCGCCG CTCAAGCAAT TGATTCGCCA ATTGCAGGAT
TGGGAACATG GCACCAACAC CGCCCCGCAG GGCGCGGGCC AAGGCGGCAC GCCGCTGATT
GCGCTGTCCT CCCCCGCCGG CATCGTGGCC GGCAGCGCGG ACAACATCGC GCTGGCCGCG
CAGACCTCGG TAGACGTCAT GTCCGGAGAT AACACCCAGA TCAGCGCCGG CAAGGATGCG
CTGATCTACG CGACCAATGA GGTCAGCATC TTCGCCGTGG AAGGCGGCGT GCGCGTGGTG
ACGGCCAAGG GCGACGTGGT GGTCGAATCG CACACGGGAA ACATTGCACT GAACGGCGCC
AAGCGCATCA CGCTCAACGC TGGCGAGGAA ATCGTCCTCA ATGCGCCCAG GGTGCGCACC
GTCACCCAAG GCGCGCAGAC CACGTGGGGC GGCGGGGAGA TTGTCGAAGA GGCCAGCGGC
GGCTACACCA TCAAGTCCGC GAACTTTCAG CAGATCGGCG GCGGCGGTGC GCCTGCGGCG
TCGAACCTCC CCGCCAATGA CCGGCATTTC GACCGGCACC TGCGATTGAC CGACCAGCTG
ACCGGCGAAC CGATCGCCAA CCGGCGCTAT CGGGCCACGC TCGCGGACGG ACAAGTGGTC
GAGGGCGTGT CCGATGCGCA GGGCTATGCG AAGCACCTCA AGAGCAGCAT CACCTTCGCG
CACTACTCCC TGGAAATTCT CGACTGA
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| Protein sequence | MNADVTSIQL PCALAQNRRA MRLDFGPAAT AAAQTLVPQY ADIHQGICAG LEAQVVCLSE
RADLSRDELL GLPVSIQVAT DGGALHAING IVSDVHSGAF DGTLASYRLT IIDAMSLMRR
RRNMRIFVGK SVPDILGILL AEWQQRSAIL GQAFRFQLLL DRSGYPVRAQ TLQLDESDSG
FLDRLTRREG MFCFVVAGTP DGSDGDTPAQ TLVFCDDPMK LPQAQAGAVP FHYGAAVKAR
DSVTRWGEAH SLVSGTIRGT SPDYETGRVD RVDVDTLLDL GKAGNDLARL MTDAAVDRAH
AGDSRADYER QGRLRMQAHE RRAAYVHAAS DVRNLTPGSW FVLSGHPLVD KREPEQREFV
VTRLRQRIAN NFPKALNEQA RALAEASGWH LEVRPGRDDA QIRYENTFTC VPRGAPLTPD
YDPRIDLPRT DPMTAVVVGP NGQEVHCDEL GRYKLQFVGL YAEDHAHAQG AGTSGTERDS
AWVRAGNLWA GQRYGINLPL RAGMEVLVAF ANGDPDRPYI ATVLPGHNNM PTAFNDTGAL
PDNKHLSGIK TKEVDGSGFN QVAFDDTPGE ISSQLASTHA ASQLSLGYLT HPRDQGKAEP
RGEGAAITTQ AMASMHGNQG MLLSTERRSQ AGNQMDRDGL LGLAQAFASV AAEFGKMAAT
HHAGTYDPAP LKQLIRQLQD WEHGTNTAPQ GAGQGGTPLI ALSSPAGIVA GSADNIALAA
QTSVDVMSGD NTQISAGKDA LIYATNEVSI FAVEGGVRVV TAKGDVVVES HTGNIALNGA
KRITLNAGEE IVLNAPRVRT VTQGAQTTWG GGEIVEEASG GYTIKSANFQ QIGGGGAPAA
SNLPANDRHF DRHLRLTDQL TGEPIANRRY RATLADGQVV EGVSDAQGYA KHLKSSITFA
HYSLEILD
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