Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1740 |
Symbol | |
ID | 1220578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 1862281 |
End bp | 1863270 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637238132 |
Product | putative signal peptide protein |
Protein accession | NP_519861 |
Protein GI | 17546459 |
COG category | [R] General function prediction only |
COG ID | [COG2984] ABC-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.324025 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCGCT TCACGCACGT CTTCCGCCCC GTCGCGCTGG CCGCCCTGGC CGCGCTGCCG ATGGCGCTTC TGCAAGCCAC GCCCGCCCTG GCGCAAGCCG CCAAGTCGGT CGAAGTGCTG TCGATCGTCG AACACCCGGC GCTCGACGCC ATCCGCGACG GCGTCAAGGA AGAGCTGAAG GCCCAGGGCT TCGACGCCGG CAAGAACCTG AAGTGGGAAT ACCAGAGCGC GCAGGGCAGC GCCGCCACCG CCGCGCAGAT CGCCCGCAAG TTCATCGGCG ACAAGCCGGA CGCCATCGTC GCCATCACCA CGCCGGCGGC GCAGGCCGTG GTGGCGGCCA CCAAGACCGT CCCGGTGGTG TATGCCGGCG TGACCGATCC GGTGGCCGCG CAGCTGGTCA AGAGCTGGGA GCCGTCGGGC ACCAACGTGA CCGGCGTATC CGACAAGCTG CCGCTGGACA AGCAGATCGC CCTGATCAAG CGCGTGGTGC CGCACGCCAA GCGCGTCGGC ATGATCTACA ACCCGGGCGA GGCCAACTCG GTGGTGGTCG TCAATGAACT GAAGAAGCTG CTGTCGGCCC AGGGCCTGAC GCTGGTGGAA TCGGCCGCGC CGCGCACGGT CGATATTGCC CCGGCAACCA AGAACCTGAT CGGCAAGGTG GACGTGATCT ACACCAGCAC CGACAACAAC GTGGTGTCGG CGTACGAATC GCTGGTGAAG GTGGCCAACG AGGCCAAGAT TCCGCTGGTC GCCGCCGACA CCGACAGCGT CAAGCGCGGC GCCATCGCGG CGCTGGGCAT CAACTACTAC AGGCTCGGCC GCCAGACCGG CACCGTGGTC GCGCGCATTC TGAAGGGCGA GAAGCCGGGC GCGATCGCCT CGACCGGCAG CACCGACCTG GAACTGTTCG TGAACCCGGG CGCGGCCGCC AAGCAAGGCG CCACGCTGTC GGCAGACCTG CTCAAGGACG CCAAGGAAAC CGTCAAGTAA
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Protein sequence | MSRFTHVFRP VALAALAALP MALLQATPAL AQAAKSVEVL SIVEHPALDA IRDGVKEELK AQGFDAGKNL KWEYQSAQGS AATAAQIARK FIGDKPDAIV AITTPAAQAV VAATKTVPVV YAGVTDPVAA QLVKSWEPSG TNVTGVSDKL PLDKQIALIK RVVPHAKRVG MIYNPGEANS VVVVNELKKL LSAQGLTLVE SAAPRTVDIA PATKNLIGKV DVIYTSTDNN VVSAYESLVK VANEAKIPLV AADTDSVKRG AIAALGINYY RLGRQTGTVV ARILKGEKPG AIASTGSTDL ELFVNPGAAA KQGATLSADL LKDAKETVK
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