Gene TDE0820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE0820 
Symbol 
ID2739504 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp843804 
End bp844463 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content40% 
IMG OID637159693 
ProductTetR family transcriptional regulator 
Protein accessionNP_971430 
Protein GI42526332 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0110693 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATAACA ATACGGAAAA GATATTCGCC GATAAGGATG AGCTAAACAC ACGGACAAAA 
ATTTTGCATG CGGCAAAGCA GGAATTTTTG AACAAGGAGT TTGCAGATAC TAACGTGCGC 
GCCATCGCCG AAAAGGCAGG GGTTACGACA GGGGCGCTAT ATAACCTTTT TGATAACAAA 
GACGGCATAT TCGAAGCTCT TGTGAGCGGC GTGTTCGACG AATTCTTAGA CATAGTAGCG 
CATCGCGATG TATTCGACGC TGAAAATTTC GGTATGAAAA CAAGCGATCT TTCAGCAATT 
ATCGAACTAT CGCAACGCCG GTTCTTAAAA ATGGTGGATT TTTTTTACGA TAATTGGGAT 
GCGATGAAAC TGATTGTCTG TTGTTCGAAG GGAAGCTCCT ATGAGCACAT TTTTGATAAA 
GCAATCGATT TAATCGACCG TAAAACACTT CAATGGCTGA AACAAGACGG CGTTAAACTG 
TCGCGTCGCA TACGGTTTTT TATTCACGTC ATGGTAACGA TCAGCTTTGA AAATTTAAAA 
GAGATTTTTT ATCATAACTT AAAAAAAACA GAAGCAGTGG ATTATGTGCT CGATTTTAAC 
GTATACCATT GCGCCGGCTG GAAACAATAT TGGATGGAAC AAGTAAAGGG TAATGGATAA
 
Protein sequence
MDNNTEKIFA DKDELNTRTK ILHAAKQEFL NKEFADTNVR AIAEKAGVTT GALYNLFDNK 
DGIFEALVSG VFDEFLDIVA HRDVFDAENF GMKTSDLSAI IELSQRRFLK MVDFFYDNWD 
AMKLIVCCSK GSSYEHIFDK AIDLIDRKTL QWLKQDGVKL SRRIRFFIHV MVTISFENLK 
EIFYHNLKKT EAVDYVLDFN VYHCAGWKQY WMEQVKGNG