| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4540 |
|---|
| Symbol | |
|---|
| ID | 1043349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 5156477 |
|---|
| End bp | 5157289 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637147938 |
|---|
| Product | alpha/beta fold family hydrolase |
|---|
| Protein accession | NP_746649 |
|---|
| Protein GI | 26991224 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | [TIGR01250] proline-specific peptidases, Bacillus coagulans-type subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTATT TCGAACACGA AGGATGCACG CTGCATTACG AGGAATATGG CCAGGGCGAA
CCCTTGGTGC TGCTACACGG CCTGGGCTCC AGCTGCCAGG ACTGGGAGTT GCAGGTGCCG
CTGTTCAGCC GCCACTACCG GGTGATACTC ATGGACATCC GCGGCCACGG TCGCTCCGAC
AAACCCGCTG ACGGTTACCA GATCGCCACC TTCAGTGCCG ACCTGCTGGC CCTGCTCGAA
CACTTGCACA CAGGCCCGGT GCACTTCGTC GGCTTGTCCA TGGGCGGCAT GGTCGGCTTC
CAGTTTGCCG TCGACCACCC TCAATGGTTG CGCAGCCTGT GCATCGTCAA CAGCGCCCCT
GAGGTCAAGC GCCGCACCCG CAGTGACTGG GCGTGGTGGC TCAAGCGCTG GAGCCTGGCG
CGCATCCTCA GTGTCGAAAC CGTCGGCAAG GGGCTGGCCG AGCGGCTGTT CCCCAAACCA
CAACAAGCAG ACCTGCGGCA GAAAATGGCC CAGCGCTGGG CGCGCAACGA CAAGCGCGCC
TACCTGAAAA GCTTCGACGC CATCGTCGAC TGGGGCGTGC AGGAACGCAT CGGGCAGATT
CACTGTCCTA CCCTGGTGAT CGCCGCCGAC CACGATTACA CGCCGATACA ACTCAAAGAG
CGCTATGTCG CCCTCATACC CAACGCCAGG CTGGTCGTCG TCGACGATTC CCGGCACGCT
ACACCCCTCG ATCAACCCGA GGTCTTCAAC CAGACCCTGC TGCAGTTCCT CGCAGCCGCT
TCCACCTCTC AAGGATCTTT GAGCCCATGC TGA
|
|---|
| Protein sequence | MAYFEHEGCT LHYEEYGQGE PLVLLHGLGS SCQDWELQVP LFSRHYRVIL MDIRGHGRSD
KPADGYQIAT FSADLLALLE HLHTGPVHFV GLSMGGMVGF QFAVDHPQWL RSLCIVNSAP
EVKRRTRSDW AWWLKRWSLA RILSVETVGK GLAERLFPKP QQADLRQKMA QRWARNDKRA
YLKSFDAIVD WGVQERIGQI HCPTLVIAAD HDYTPIQLKE RYVALIPNAR LVVVDDSRHA
TPLDQPEVFN QTLLQFLAAA STSQGSLSPC
|
|---|
| |