| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3877 |
|---|
| Symbol | |
|---|
| ID | 1046688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4397541 |
|---|
| End bp | 4399013 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637147286 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_746007 |
|---|
| Protein GI | 26990582 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
|---|
| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0282142 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGGTTGC CCTCAGTCGT GCGCAGCGTC AGGGCCCGCA AACACAGCAG CGCATCAGCG
TGCGGGCCTC GGCCTTCGCC ATTCAGTCTC AACTCTGACC GCGTTCGCGG CAGTGACCAC
AACCGCCTGA TGGCGGTTTT TTTATGCCCA GGAGGCAGCA TGTCCCTCGT AACTCAATTG
CGTAGCGAAC GCGCCACTAT CAATGGTCAG ATCCAGTCCC TGGCCCAGCT GGAGGCCGCT
GGTACTGCGC TCAGCGCGGA GCAGCTCTCA CAGTTCGAGC AGCTCAGCAC CCAGTTCAAC
CAGCTGACGG AGAAACTCGC GCGCGCCGAA GCGGCCGAGC GTATGGCGAC CGCGAGTGCG
GTCCCCGTGA ATGAAGGTGC TCAAGGCCTG AACGGCCCGC CCGGCAGCAT CAGCGGCCCA
TACACGGCCA AGCCGGTGCC GGGTGCCAAC ATGGCGCAGA TGGTCCGCGT GCTGGCCGCT
TCCCGCGGCG ATCAGCAGGC AGCCGCGAAG TTGGCCGCCG ACTCGGGCTA CAACCCTGAA
ATCGCCATGG CGCTCAGCAC CGTGACACCA GGCGCTGGTG GGGTGCTGGT GCCGCAGAAC
TTCTCCAGTG AAGTCATCGA GCTGCTCCGG CCAAAGTCGG TGGTTCGCAA GCTCGGGGCG
GTTTCGCTGC CACTGGAGAA TGGCAACCTC ACTGTTCCGC GCATCAAGGG CGGCGCGGTG
GTGGGGTACA TCGGTACTGA AGAGGATATG CCTGCCACAG ACATGCAGTT CGACGACCTC
AAGTTGTCGT CGAAGAAGCT GGCGGCACTG GTTCCGATCA GCAACGACCT GCTGGGGTAC
TCGGGTACCA ACCCCAACGT AGACCGCCTG GTGGTGAACG ACCTCACTGC CTCGGTGGCT
CTGGCGGAAG ACCTGTCCTT CCTGCGCGGT GCCGGTACCG GCAACCTGCC CAAGGGCCTG
CGTTTCTGGG CGCCCGCCTT CAACGTGTTC GCAGCACCGG CAGCTGTAAC CCTGGAAGCA
GTTGAGTTCG CGCTGTCCGC CCTGATCCTG CGCTTGGAGA ACGCCAACTC CAACATGACC
TCACCGGGGT TTGTCATGGC GCCGCGGACC AAGCGCTGGC TGGCCGCGCT GCGTGATGGC
AACGGGAACA AGGCTTATCC GGAGCTGGAT CAGAACATGC TAAAGGGCTT CCCGGTCGGC
TCGACTACTC AGATCCCCAT CAACCTGGGG GCCGAGGGCG ATGCTTCTGA GATCCACTTC
GCGGACTTTG CCGACTGCTT CATCGGCGAA GACGATGCCA TGGTCATCGA TTTCAGCAAG
GAAGCAACCT ACAAAGACGG CAGCGGCAAC GTCATCAGCG CATTCCAGCG TGATCAGACC
CTGGTCCGGG TAATCGCCAA GCACGACTTC GGTCCGCGCC ACGTCGAATC GGTCGCGGTG
ATGACCGATG TCAAATGGGG TAGCTCCCTG TAA
|
|---|
| Protein sequence | MRLPSVVRSV RARKHSSASA CGPRPSPFSL NSDRVRGSDH NRLMAVFLCP GGSMSLVTQL
RSERATINGQ IQSLAQLEAA GTALSAEQLS QFEQLSTQFN QLTEKLARAE AAERMATASA
VPVNEGAQGL NGPPGSISGP YTAKPVPGAN MAQMVRVLAA SRGDQQAAAK LAADSGYNPE
IAMALSTVTP GAGGVLVPQN FSSEVIELLR PKSVVRKLGA VSLPLENGNL TVPRIKGGAV
VGYIGTEEDM PATDMQFDDL KLSSKKLAAL VPISNDLLGY SGTNPNVDRL VVNDLTASVA
LAEDLSFLRG AGTGNLPKGL RFWAPAFNVF AAPAAVTLEA VEFALSALIL RLENANSNMT
SPGFVMAPRT KRWLAALRDG NGNKAYPELD QNMLKGFPVG STTQIPINLG AEGDASEIHF
ADFADCFIGE DDAMVIDFSK EATYKDGSGN VISAFQRDQT LVRVIAKHDF GPRHVESVAV
MTDVKWGSSL
|
|---|
| |