| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3503 |
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| Symbol | |
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| ID | 4280397 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4171139 |
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| End bp | 4173403 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136316 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_752170 |
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| Protein GI | 114564656 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.216173 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAAA ATTTCAAGCT ATCTTCATTA ACTGTAGCAA TAGCTTTAAT TTGCCAAGCT
AATAGCAGTT TTGCCGCAGA TAAAATACAA CAAGAAGTCA GCAAAGATAG AGTCGAAAAA
ATTGTAGTAA CCGGCACATT TAGTGGGAAA AGTGTTGCCA AAGAAGATGC TAGTTATGCC
ATTAGCTCGT TTTCTGAAGA CGATATTAAA AAATTGGCTC CAAAAAGCAC TGCAGAACTT
TTTCAGGCTG TACCGGGGAT TTGGGCTGAA AGTTCAGGTG GTGTATCAGG TGCTAACGTG
TTTGTTCGTG GTTTTCCTGG GGGCGGAGAT GCTCCTTTCT TAACTGTTCA ACTGCAAGGC
GCGCCTATTT TTCCACCGCC AACGCTGTCA TTTTTAGAAA ACTCAACCTT ATTTAGACTA
GACGAAACAG TGTCATTCAT GGAAGCACTT CGTGGTGGTC CTAATCCTGT GGTATCAAAT
GGCCAACCAG GTTTAACCAC AAACTTTTTA TTAAAAGAAG GCTCCGAAGA AACTGAAGGT
TTAGTGAAAT ATTCAACTTC AGATTACAAC TTACAACGTG TTGACGGCGT TGTTAGTGGC
CAATTAGCAG AAGATTTATA TTTTATGGCT GGTGGCTATA TTAAGAGCTC ACCAGGCGTT
CGTGATGCCG GATTCAATGC AGAAGAAGGC AAACAGTTTA CGGTTAATAT CACCAAAAAA
TTTGATAACG GTAAGTTCAA TGTTTTTACT CGTCAAACTG ATGACCATGG CGTGTGGTAT
TTGCCTGCAC CGATAAATGT TTCTACTGTC GATAATCAAT ATAACCAAAT TGGAACCAAT
AACCGTCAAG CAACAGTTAA ATTTGGACCC AATGGTGAAG CTATCAACGT TGATTTTGGC
CAAGGTCGAG GCTGGAATGG TTCTGTATCA GGCGGCAGTT TAGATTTAAC CTTAGACAAT
GGTTGGGGCA TTGTTGACCG TTTTATTTAT ACCAAAGGCG ATGCTGATAC ATATGGATTA
GTCCCTGATG GTGATCCAGT CATGTTATCG ACGATTGCAG ACAGTGGAAG CACTGCTTCT
GGCGCGGTAA CAGGAACAGA ATACGCGGGC TCAACTGTGG TACAGCAAAT TGGTCGTTGG
GTTGTTAAGA AACAAATTGA AGCCTTTACC AATGATCTCG CTATTACTAA AACATTTGAT
AACAGTACAA TTACTGCGGG TTATTACCAC TCTACCTTTA GCGCGAATGA CTGGTGGTCA
ATAGGTAACC AAGCTTATCA TGTGGTTGAG TCTGGTGGCG AAATGCTAAC GGGAATCGAT
TGTAACGATA ACCAAGATAG CTGTGGTTGG AATTACGATA TAAACAGTGT TGGCGATGGG
TCTACTCAAG CTTTTTATGT TGCAGCATCC CATGAAATAA CCGATTCACT CTCGATGGAT
GCTGGTATTC GCAACGAAAA TCATCAAATT GAGTATACGG TTGATGAAGG GTTAGACGGT
GTGATCAGCA AAGCGGTTTC CTATGATGAG TCTGCCATAG CATGGACTTT AGGAGCAAAT
TGGATGTTTG CTGATTCCCA AGGCATATTT GCACGGATAA GTGATGGTTC TAAAATGCCA
TTCTTTGATG ATTTTCGCGA TAACTTTGAC GCATATCAGT CGGGTGAAGA TTTGATTAAA
GATGTTACTC AATATGAATT GGGTTACAAG TTAGTTGCTG ATGATTACGA ACTTTATGCC
ACAACATTTT TCAATGAAGT AAAAGGCGAT ACTTTTGTTG CAGTTCCAGG TGCCCCAGCT
GAGGTATTAA CAAACCAAGC GTATGGTCTT GAAGTTGATT TTAATTACTT CACGGATAGT
GGCTTTACGT TAAATCTTAA TTCAACCATA CAACAAACTG AAATTACCGA AAGCCCTACC
AATAAAGGTA ATGAAGCGCA AAGGCAGCCT GGCTGGCAAG TGCGTATGAC ACCTAGTTAC
GATATTGATT TTTCAAATGG GATGTACGCG ACGCTTTACG GAACGGTATC GGCAGTTGGC
GACCGTTTTG CTAATAATGA AAACACGGTA ACGTTAGCTG GATACACCAA AGTCGATTTA
GGCGTTATTG TTAACTTAAC CGAAGAAGTT CAAATGCAGC TTGCTGTGAG TAATTTAACA
GATGAGAATG CACTAACAGA AGGTGACCCT CGAGATTCAC TTTCTTCAAA TGGACGCTAT
ATCCTTCCAA GAACCATTGA TTTTAATGTA AGTTACCAGT TTTAA
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| Protein sequence | MMKNFKLSSL TVAIALICQA NSSFAADKIQ QEVSKDRVEK IVVTGTFSGK SVAKEDASYA
ISSFSEDDIK KLAPKSTAEL FQAVPGIWAE SSGGVSGANV FVRGFPGGGD APFLTVQLQG
APIFPPPTLS FLENSTLFRL DETVSFMEAL RGGPNPVVSN GQPGLTTNFL LKEGSEETEG
LVKYSTSDYN LQRVDGVVSG QLAEDLYFMA GGYIKSSPGV RDAGFNAEEG KQFTVNITKK
FDNGKFNVFT RQTDDHGVWY LPAPINVSTV DNQYNQIGTN NRQATVKFGP NGEAINVDFG
QGRGWNGSVS GGSLDLTLDN GWGIVDRFIY TKGDADTYGL VPDGDPVMLS TIADSGSTAS
GAVTGTEYAG STVVQQIGRW VVKKQIEAFT NDLAITKTFD NSTITAGYYH STFSANDWWS
IGNQAYHVVE SGGEMLTGID CNDNQDSCGW NYDINSVGDG STQAFYVAAS HEITDSLSMD
AGIRNENHQI EYTVDEGLDG VISKAVSYDE SAIAWTLGAN WMFADSQGIF ARISDGSKMP
FFDDFRDNFD AYQSGEDLIK DVTQYELGYK LVADDYELYA TTFFNEVKGD TFVAVPGAPA
EVLTNQAYGL EVDFNYFTDS GFTLNLNSTI QQTEITESPT NKGNEAQRQP GWQVRMTPSY
DIDFSNGMYA TLYGTVSAVG DRFANNENTV TLAGYTKVDL GVIVNLTEEV QMQLAVSNLT
DENALTEGDP RDSLSSNGRY ILPRTIDFNV SYQF
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