| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4548 |
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| Symbol | |
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| ID | 5107006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4985650 |
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| End bp | 4987305 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640505819 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001190027 |
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| Protein GI | 146309562 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAG CCCCTGTGCC TCCAGGGCCC AGCAAAGCCA ACGACGACGG TATTCCGGCC
CCGAGTGGAG CCGTCAGTCT GATAGACACC GACTACGTGG TCGGCCAGGA CAACATCCGC
GGTCGCTACC TGGTCAACCT CGATATCCAC GGCAAGGTAT TTCTCGTCTC CGCGCTCAGT
GCGCTGATCT TCGTGGTGCT GGCGCTGGCC CTGCACAACG AGGTGGAGCC GCTGTTCAAG
GCCGTTCGCG ACTGGCTCAC GCAGAACCTG GCGTGGTTCT TCCTCGGTTC GGCCAATATC
TTCGTGCTGC TGTGCCTGGG CCTGATCGTC TCGCCGCTGG GCCGGGTGCG TCTCGGCGGC
ACGCTGGCGC GTCCCGACTA TTCCTACACC TCTTGGTTCG CCATGCTGTT CGCCGCCGGT
ATGGGCATCG GCCTGATGTT CTATGGCGTG GCCGAACCCA TGTCGCACTA CGACTCGTCC
CTGGCCGGCG TCGCCGTCGG CGAGAACGGT GTGCGCAGCG ACTGGGCGCC GCTGGGCGCG
GCGGTTGGCG ATTCCGAAGA AGCGGCGCGC CTGAGCATGG CCACCACCAT CTTCCATTGG
GGCCTGCATC CCTGGGCGAT CTACGCCATC GTCGCCCTGG CGTTGGCCCT GTTCGCCTTC
AACAAGGGCC TGCCGCTGTC GTTCCGTTCG ATCTTCTTCC CGCTGCTGGG CGAGCGGGTC
TGGGGCTGGC CGGGTCACGT GATTGATATT CTCGCCGTGT TCGCCACCCT GTTCGGCCTG
GTCACCTCGC TGGGTCTGGG CGCCGAGCAG GCCACCGCCG GCCTGCACAG CCTGTTCGGC
CTGCCGGCCG ATCCCACCAC CAAGGTGCTG CTGATCACCG TCATCACCCT GATCGCGCTG
TGTTCGGTGC TGGCCGGCGT GGACAAGGGC GTCAAGCGCC TGTCCGAGAT CAACCTGGGC
CTGGCCCTGG TGCTGCTGCT GTTCGTCCTG ATCGCCGGAC CCACCGCGCT GCTGCTGAGT
GGCGTGCTGG ACAACCTTGG CGCCTACCTG CAGTACCTGC CGGCGCTGTC CAACCCCATC
GGCCGTGAAG ACGCCAACTT CAGCCAGGGC TGGACCGCCT TCTACTGGGC CTGGTGGATC
AGCTGGTCGC CGTTCGTGGG CATGTTCATC GCCCGCGTCA GCCGCGGCCG CACCGTGCGC
GAGTTCCTTA TTGCCGTGCT GCTGGTGCCG TCGCTGGTAT CGGTGCTGTG GATGAGCGCC
TTCGGCGGCA CCGCACTGCA TCAGGCCCTG GGCGGCCTGA GCGAACTGCA GCAGGCGGCG
CTGGAGCTGA AGATGTTCGT CATGCTCGAG CAACTGCCGA TCAGCGCGAT CAGCTCGTTC
GTCGCCATCG TGTTGGTGGT GCTGTTCTTC ATCACCTCGT CGGACTCTGG CTCGCTGGTG
ATCGACACCA TCACCGCCGG CGGCAAGGTC AATGCGCCGA TGCCGCAGCG GGCGTTCTGG
GTGCTGCTCG AGGGCGCGCT GGCCGTGGCA TTGCTGCTGG GCGGCGGCCT GGTGGCGCTG
CAGGCCATGG CGGTATCCAC CGGCCTGCCG TTCACCCTGG TACTGCTGGT GGGTTGCGTG
TCCATCATCA AGGGACTGAT GAGCGAGCCG CGCTGA
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| Protein sequence | MSQAPVPPGP SKANDDGIPA PSGAVSLIDT DYVVGQDNIR GRYLVNLDIH GKVFLVSALS
ALIFVVLALA LHNEVEPLFK AVRDWLTQNL AWFFLGSANI FVLLCLGLIV SPLGRVRLGG
TLARPDYSYT SWFAMLFAAG MGIGLMFYGV AEPMSHYDSS LAGVAVGENG VRSDWAPLGA
AVGDSEEAAR LSMATTIFHW GLHPWAIYAI VALALALFAF NKGLPLSFRS IFFPLLGERV
WGWPGHVIDI LAVFATLFGL VTSLGLGAEQ ATAGLHSLFG LPADPTTKVL LITVITLIAL
CSVLAGVDKG VKRLSEINLG LALVLLLFVL IAGPTALLLS GVLDNLGAYL QYLPALSNPI
GREDANFSQG WTAFYWAWWI SWSPFVGMFI ARVSRGRTVR EFLIAVLLVP SLVSVLWMSA
FGGTALHQAL GGLSELQQAA LELKMFVMLE QLPISAISSF VAIVLVVLFF ITSSDSGSLV
IDTITAGGKV NAPMPQRAFW VLLEGALAVA LLLGGGLVAL QAMAVSTGLP FTLVLLVGCV
SIIKGLMSEP R
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