Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_0105 |
Symbol | |
ID | 5078880 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 120441 |
End bp | 121487 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640497225 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001181640 |
Protein GI | 146291216 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGCGGTATT TAATAGTCAG TTTATGCCTG TTATGTTCAG CAGCATACGC AACAACACCA GTCACGGTTG CCTTACCCCA ACTGGGCAGC GCCAACGAAC TGTTACCATT GAGTGGTTCT ATTAAATCCG CACGAGTTGC CCGTCTATCA CCTCGTACCG ATGGGCTAGT AGCGCAAGTG TTAGTTGATG CAGGGGCGAA GGTCAAAGCA GGGCAGCCAC TACTTAAGCT CGACGATACC TTGGCAGTGC ACCAATTAAC CCAACGCCAA GCCGATATGA TGGCTGCTAC TACCCAACTG ACAGAAAAAC AGCGCCTGTT AACCGAAGCG CAAACCTTAA GTTCCCAACA ACTTTTTCCA GAAACTGAAC GAGCGATGCG TCAAGCAGCA CTCGCAGAGG CTAAAGCTAA CCTACAAAAT GCCGAGGCTG CGCTGGCGTA CCAAAAAGAA GTGGTGGCTC GCCATCAACT CATTGCGCCT TTTGCAGGCG TGATTTCAAG TAAACAAACT GAAACGGGTG AATGGGTCGA TGTTGGCACT GAAATATTCA CTTTAGTATC CCAAGAACAA CTCTGGCTAG ATATCCAAGT ACCACAGGAA ATGTTCCAAC AGATCACCAC AGCAACTCAA ATTGAGATAG CTGCCGATAT GCTGCCAACA AAACAATTTA CTGGGCAAGT CAGCGCTCTC GTCCCCGTTA GCGATCACAA TGCCCGTAGC TTCTTGATGC GATTAACCAT CCCCGATGCC AATTCACAGT TAATGCCTGG CACATCGGCA ACGGCGACCT TTCACTTACA GCGCGAGCAA CACAGTTTAG TGATTCCGCA GGATGCCTTA GTCCGCCACC CCGATGGCCA GTTTAGTGTC TTTACCGTAC AAAATAATAT TGCCCAACGT CATAGTGTCA AAATTGGTCG TAGCAGCGCA ATTGGTATAG AGATCCTCAG CACACTACCT GAAGGAGCCC CCGTGGTCAT TCGTGGTAAC GAAAATCTAC AGGATCAACA AGCCGTTTCT GTCATTAATC ACAGTGTAGG AGGCTAG
|
Protein sequence | MRYLIVSLCL LCSAAYATTP VTVALPQLGS ANELLPLSGS IKSARVARLS PRTDGLVAQV LVDAGAKVKA GQPLLKLDDT LAVHQLTQRQ ADMMAATTQL TEKQRLLTEA QTLSSQQLFP ETERAMRQAA LAEAKANLQN AEAALAYQKE VVARHQLIAP FAGVISSKQT ETGEWVDVGT EIFTLVSQEQ LWLDIQVPQE MFQQITTATQ IEIAADMLPT KQFTGQVSAL VPVSDHNARS FLMRLTIPDA NSQLMPGTSA TATFHLQREQ HSLVIPQDAL VRHPDGQFSV FTVQNNIAQR HSVKIGRSSA IGIEILSTLP EGAPVVIRGN ENLQDQQAVS VINHSVGG
|
| |