Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2030 |
Symbol | |
ID | 6161560 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2203456 |
End bp | 2205384 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641664799 |
Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
Protein accession | YP_001791062 |
Protein GI | 171058713 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism [R] General function prediction only |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.622365 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCGC CGGGCGTGCC AGACCCGCGG GGCGAGGCCC AGGCGCTGCG GCTCGATCAG CTGCAGGTGG CGCTCGATGT CGATCAGGCC GACGCCGCCT TGCTGCGCGC AGTTGACGGC CTGTCGCTGG CGATCCGCCG CGGCGAGACC TTCGCGCTGG TCGGCGAATC GGGCTGCGGC AAGAGCATGA CCGCGCTTGC GCTGATGCGC GTGCTGCCGC ACAACGGTTT TGTCGAATCG GGCTCGGTGC GCCTGGGCCG CACCGAACTG CTCGACCTGC CCGAAGCGCA GATGCGCCGG GTGCGTGGCG GGCGCATCGG CATGATCTTC CAGGAGCCGT CGACCAGCCT GAACCCGGTG ATGACGGTGG GCGCGCAGCT GCGCGAGGCG ATCGAGGCCC ACACCGCACT GCGCGGCGCC GCCGCCCGTG CACGTGCGGT CGAGTGGCTG GCGCGCGTGG GCCTGCCCGA GCCGGCGCGC TGTTTCGACG ACTACCCGTT TCGCCTGTCG GGCGGCCAGC AGCAGCGCGT GATGATCGCC ATCGCGCTGG CCGCCGAGCC CGATTTCCTG ATCGCCGACG AGCCGACCAC GGCGCTCGAC GTGACGATCC AGGCGCAGAT CCTCGACCTG CTGCGCGACC TGCAGCGCGA GCACCAGATG GGCCTGTTGC TGATCACGCA TGACCTGGCG GTGGTGGCCG GCATGGCGCA GCAGGTGGCG CTGATGTATG CCGGCCAGAT CGTCGAGGTC GGCAGCGCCG AGGCATTTTT TGCCGCGCCG CGCCACCCCT ATGCGCAACT GCTGTTGCAG GCGCTGCCCG ACGGCGCACG GCGCGGCCGG CCGCTGGCGG CGATCGGCGG CGCGGTGCCG TCGCTTGCGC AGCAATTCAA CGCCTGCCGC TTCGCGCCGC GCTGCCCGCA TGCGCAGGAC GTCTGCCTGA ACGCCGAGCC GACGTGGGTG GAGATGCCGC CAGGCCACGG GCTGCGTTGC GCGCGCGCCG GCGATGCGGC GCTGGATCAC GCAGCGCATG GCAGATCGCC AGCACCGTCG ATCACGCCGT CGACAGGTCG TCCGATGACG CCACCCGATG CCCGCCTCAC ATCCGGCGCC ACGCCGGTGC CTTTGCTGGC GGTGGAGCAG TTGCGTGTCA CGTTCTCGCG CGCGAGCGGA TTCTGGTGGC GCTCGCAGTC TGGCACCGCC GCCGTCGACG GCATCAGCCT GCAACTGGCG CGCGGCCGCA CGCTGGCGCT GGTGGGCGAA TCGGGCAGCG GCAAGACGAC CACCGGCAAG GCGATCGCGC AGTTGCTGCG GCGCCAGGCC ACGTGCACCG GCCGCGCGCT GCTCGACGGC CGCGATCTGT TCACCTTGCA AGGCAGCGAA CTGCGCGCCG CGCGGCGGGA GGTGCAGCTG ATCTTTCAGG ACCCGTACGC CTCGCTGAAC CCGCGCATGC GGGTGGCCGA CATCCTGGCC GAGGGCCTGA TCGAGTTGCG GCCGGAGTTG AGCCAACACA CGCGCAAACG CCGCGTCGAC GACCTGGCCG AGCAGGTCGG CCTGCCGTCA CGCGCCTTGC AGGCTTATCC GCACGAGTTT TCGGGCGGCC AGCGCCAGCG CATCGCGATT GCGCGCGCAC TGGCGGTCGA GCCGCGGCTG CTGATCTGCG ACGAGCCGAC CTCGGCGCTC GACGTGTCGG TGCAGGCACA GATCCTCAAC CTGCTGCGCC AGTTGCAGCA CGACACCGGC GTGGCGCTGC TGTTCATCAC CCACCACCTC GGCGTGGTCG AGTACCTGGC CGACGAGGTG GCGGTGATGC AGGGTGGGCG CATCGTCGAG GTCGGCACGG TCGACCAGGT GCTGGGCGCG CCGCGCAGGG ACTACACCCG CGCGCTGCTG GCCGCGGTGC CACGGCTGGC GACCCGAACC GGGCCCTGA
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Protein sequence | MSAPGVPDPR GEAQALRLDQ LQVALDVDQA DAALLRAVDG LSLAIRRGET FALVGESGCG KSMTALALMR VLPHNGFVES GSVRLGRTEL LDLPEAQMRR VRGGRIGMIF QEPSTSLNPV MTVGAQLREA IEAHTALRGA AARARAVEWL ARVGLPEPAR CFDDYPFRLS GGQQQRVMIA IALAAEPDFL IADEPTTALD VTIQAQILDL LRDLQREHQM GLLLITHDLA VVAGMAQQVA LMYAGQIVEV GSAEAFFAAP RHPYAQLLLQ ALPDGARRGR PLAAIGGAVP SLAQQFNACR FAPRCPHAQD VCLNAEPTWV EMPPGHGLRC ARAGDAALDH AAHGRSPAPS ITPSTGRPMT PPDARLTSGA TPVPLLAVEQ LRVTFSRASG FWWRSQSGTA AVDGISLQLA RGRTLALVGE SGSGKTTTGK AIAQLLRRQA TCTGRALLDG RDLFTLQGSE LRAARREVQL IFQDPYASLN PRMRVADILA EGLIELRPEL SQHTRKRRVD DLAEQVGLPS RALQAYPHEF SGGQRQRIAI ARALAVEPRL LICDEPTSAL DVSVQAQILN LLRQLQHDTG VALLFITHHL GVVEYLADEV AVMQGGRIVE VGTVDQVLGA PRRDYTRALL AAVPRLATRT GP
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