64 Unclonable genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Pecwa_0002  CDS  NC_013421  1455  2555  +  1101  DNA polymerase III subunit beta  YP_003257478  unclonable  0.00000790466  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0323  CDS  NC_013421  358585  359976  -  1392  outer membrane channel protein  YP_003257783  unclonable  0.00000673159  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0787  CDS  NC_013421  836096  836566  -  471  arginine repressor  YP_003258213  unclonable  0.00000129579  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0788  CDS  NC_013421  837037  837972  +  936  malate dehydrogenase  YP_003258214  unclonable  0.0000050316  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0789  CDS  NC_013421  838036  838299  -  264  putative transcriptional regulator, Nlp  YP_003258215  unclonable  0.00000116057  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0790  CDS  NC_013421  838488  838874  +  387  MuA-transposase/repressor protein CI DNA-binding protein  YP_003258216  unclonable  0.00000163331  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0791  CDS  NC_013421  839123  839497  +  375  MuA-transposase/repressor protein CI DNA-binding protein  YP_003258217  unclonable  0.00000168449  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0792  CDS  NC_013421  839569  840540  -  972  octaprenyl diphosphate synthase  YP_003258218  unclonable  0.00000411512  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0801  CDS  NC_013421  847364  849319  +  1956  ATP-dependent metalloprotease FtsH  YP_003258227  unclonable  0.0000253513  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_1015  CDS  NC_013421  1096499  1097521  +  1023  cell division protein ZipA  YP_003258439  unclonable  0.00000590844  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1198  CDS  NC_013421  1297312  1297887  +  576  RNA polymerase sigma factor RpoE  YP_003258619  unclonable  0.00000152256  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1199  CDS  NC_013421  1297947  1298594  +  648  anti-RNA polymerase sigma factor SigE  YP_003258620  unclonable  0.00000199919  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2112  CDS  NC_013421  2301751  2303076  +  1326  hypothetical protein  YP_003259494  unclonable  0.000011239  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2212  CDS  NC_013421  2404570  2404686  +  117  hypothetical protein  YP_003259589  unclonable  0.000000569012  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2232  CDS  NC_013421  2423583  2424707  +  1125  ribonuclease D  YP_003259609  unclonable  0.0000142967  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2233  CDS  NC_013421  2424876  2425106  -  231  hypothetical protein  YP_003259610  unclonable  0.00000197888  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2234  CDS  NC_013421  2425321  2425590  -  270  cell division topological specificity factor MinE  YP_003259611  unclonable  0.00000201972  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2235  CDS  NC_013421  2425594  2426406  -  813  cell division inhibitor MinD  YP_003259612  unclonable  0.00000561907  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2236  CDS  NC_013421  2426427  2427113  -  687  septum formation inhibitor  YP_003259613  unclonable  0.00000399265  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2237  CDS  NC_013421  2427250  2427507  +  258  protein of unknown function DUF709  YP_003259614  unclonable  0.00000163331  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2238  CDS  NC_013421  2427851  2428507  +  657  hypothetical protein  YP_003259615  unclonable  0.00000304661  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2641  CDS  NC_013421  2889470  2890639  -  1170  tetratricopeptide repeat protein  YP_003260004  unclonable  0.00000590844  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2694  CDS  NC_013421  2948018  2952304  -  4287  YD repeat protein  YP_003260056  unclonable  0.00194911  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2745  CDS  NC_013421  3004944  3005180  +  237  LPP repeat-containing protein  YP_003260106  unclonable  0.000000753676  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2806  CDS  NC_013421  3071465  3072706  -  1242  3-oxoacyl-(acyl carrier protein) synthase II  YP_003260166  unclonable  0.00000450651  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2807  CDS  NC_013421  3072788  3073024  -  237  acyl carrier protein  YP_003260167  unclonable  0.000000875833  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2808  CDS  NC_013421  3073178  3073912  -  735  3-ketoacyl-(acyl-carrier-protein) reductase  YP_003260168  unclonable  0.00000227771  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2809  CDS  NC_013421  3073927  3074856  -  930  malonyl CoA-acyl carrier protein transacylase  YP_003260169  unclonable  0.00000415915  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2810  CDS  NC_013421  3074874  3075827  -  954  3-oxoacyl-(acyl carrier protein) synthase III  YP_003260170  unclonable  0.00000411512  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2811  CDS  NC_013421  3075834  3076880  -  1047  putative glycerol-3-phosphate acyltransferase PlsX  YP_003260171  unclonable  0.00000508326  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2812  CDS  NC_013421  3076910  3077080  -  171  50S ribosomal protein L32  YP_003260172  unclonable  0.000000738596  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2813  CDS  NC_013421  3077097  3077618  -  522  hypothetical protein  YP_003260173  unclonable  0.00000146224  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2857  CDS  NC_013421  3118482  3118988  +  507  SOS cell division inhibitor  YP_003260216  unclonable  0.000000546585  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2858  CDS  NC_013421  3119351  3120436  +  1086  outer membrane protein A  YP_003260217  unclonable  0.00000165079  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2859  CDS  NC_013421  3120589  3121050  -  462  hypothetical protein  YP_003260218  unclonable  0.000000499435  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2860  CDS  NC_013421  3121227  3122996  +  1770  hypothetical protein  YP_003260219  unclonable  0.0000072938  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2861  CDS  NC_013421  3123088  3123606  +  519  3-hydroxydecanoyl-(acyl carrier protein) dehydratase  YP_003260220  unclonable  0.000000716615  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3012  CDS  NC_013421  3280291  3280968  -  678  putative lipoprotein  YP_003260365  unclonable  0.0000028974  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3013  CDS  NC_013421  3281044  3281325  -  282  hypothetical protein  YP_003260366  unclonable  0.00000163331  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3086  CDS  NC_013421  3364477  3364986  -  510  peptidoglycan-associated outer membrane lipoprotein  YP_003260435  unclonable  0.00000103923  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3156  CDS  NC_013421  3441251  3442216  +  966  lipoyl synthase  YP_003260505  unclonable  0.00000411512  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3157  CDS  NC_013421  3442299  3442496  -  198  twin arginine translocase protein A  YP_003260506  unclonable  0.000000988339  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3158  CDS  NC_013421  3442973  3443356  +  384  CrcB protein  YP_003260507  unclonable  0.00000188116  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3159  CDS  NC_013421  3443420  3443629  -  210  cold shock protein CspE  YP_003260508  unclonable  0.00000139034  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3399  CDS  NC_013421  3735871  3736407  -  537  dinucleoside polyphosphate hydrolase  YP_003260744  unclonable  0.00000267349  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3548  CDS  NC_013421  3905060  3907297  -  2238  GDP/GTP pyrophosphokinase  YP_003260891  unclonable  0.0000488354  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3566  CDS  NC_013421  3933596  3934216  +  621  putative signal transduction protein  YP_003260909  unclonable  0.00000190048  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3586  CDS  NC_013421  3956185  3956319  +  135  hypothetical protein  YP_003260929  unclonable  0.000000968563  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3707  CDS  NC_013421  4081684  4083003  -  1320  type III effector Hrp-dependent outers  YP_003261049  unclonable  0.0000100596  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3774  CDS  NC_013421  4165289  4166221  -  933  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  YP_003261116  unclonable  0.00000774648  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3906  CDS  NC_013421  4314103  4314615  +  513  hypothetical protein  YP_003261244  unclonable  0.000000939538  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3907  CDS  NC_013421  4314712  4315410  +  699  Deoxyribonuclease I  YP_003261245  unclonable  0.00000139034  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3908  CDS  NC_013421  4315526  4316260  +  735  16S ribosomal RNA methyltransferase RsmE  YP_003261246  unclonable  0.00000146224  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4001  CDS  NC_013421  4409526  4410155  -  630  50S ribosomal protein L3  YP_003261338  unclonable  0.00000133554  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4002  CDS  NC_013421  4410188  4410499  -  312  30S ribosomal protein S10  YP_003261339  unclonable  0.000000661379  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4003  CDS  NC_013421  4410624  4410734  +  111  hypothetical protein  YP_003261340  unclonable  0.000000470251  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4004  CDS  NC_013421  4410807  4411280  -  474  bacterioferritin  YP_003261341  unclonable  0.000000958722  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4005  CDS  NC_013421  4411353  4411547  -  195  bacterioferritin-associated ferredoxin  YP_003261342  unclonable  0.000000574852  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_4006  CDS  NC_013421  4411752  4412936  -  1185  translation elongation factor Tu  YP_003261343  unclonable  0.0000035404  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4007  CDS  NC_013421  4413006  4415120  -  2115  elongation factor G  YP_003261344  unclonable  0.0000280538  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4008  CDS  NC_013421  4415217  4415687  -  471  30S ribosomal protein S7  YP_003261345  unclonable  0.00000190048  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4009    NC_013421  4415700  4415810  +  111      unclonable  0.00000106045  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4010  CDS  NC_013421  4415784  4416158  -  375  30S ribosomal protein S12  YP_003261346  unclonable  0.00000175361  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4060    NC_013421  4469626  4470346  -  721      unclonable  0.00000286795  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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