19 Unclonable genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
TM1040_0574  CDS  NC_008044  612509  612883  +  375  RNA-binding S4  YP_612569  hitchhiker  0.000000475662  unclonable  0.0000000209736  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_0575  CDS  NC_008044  612951  613289  +  339  4Fe-4S ferredoxin, iron-sulfur binding  YP_612570  hitchhiker  0.000000000552011  unclonable  0.0000000211898  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_0576  CDS  NC_008044  613567  614076  +  510  CarD family transcriptional regulator  YP_612571  unclonable  0.0000000000504519  unclonable  0.0000000218406  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_0577  CDS  NC_008044  614143  614895  -  753  cobalamin-5'-phosphate synthase  YP_612572  hitchhiker  0.00000147618  unclonable  0.0000000241437  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_0578  CDS  NC_008044  614997  616007  +  1011  nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase  YP_612573  hitchhiker  0.000265143  unclonable  0.0000000251354  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_0689  CDS  NC_008044  738085  739758  +  1674  cell division protein FtsZ  YP_612684  unclonable  0.0000000108594  decreased coverage  0.000313873  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_1148  CDS  NC_008044  1235783  1236388  +  606  pyridoxamine 5'-phosphate oxidase  YP_613143  unclonable  0.000000000148678  normal  0.197095  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_1149  CDS  NC_008044  1236516  1237055  +  540  cold-shock DNA-binding protein family protein  YP_613144  unclonable  0.000000000107907  normal  0.195461  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_1459  CDS  NC_008044  1557176  1560106  -  2931  RNAse E  YP_613454  unclonable  0.00000280055  normal  0.379566  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_1602  CDS  NC_008044  1713369  1714235  -  867  hypothetical protein  YP_613597  unclonable  0.000000000311697  normal  0.653489  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2416  CDS  NC_008044  2556474  2558207  +  1734  extracellular solute-binding protein  YP_614410  unclonable  0.000000012875  normal  1  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2566  CDS  NC_008044  2709220  2709573  -  354  DNA-directed RNA polymerase subunit omega  YP_614560  hitchhiker  0.00000389838  unclonable  0.0000000322827  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2567  CDS  NC_008044  2709688  2710257  -  570  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase  YP_614561  hitchhiker  0.00000032951  unclonable  0.0000000336172  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2568  CDS  NC_008044  2710393  2710962  +  570  hypothetical protein  YP_614562  unclonable  0.000000000124155  unclonable  0.0000000364355  Ruegeria sp. TM1040  Bacteria 
 
 
 
TM1040_2569  CDS  NC_008044  2711132  2712082  +  951  4-hydroxy-3-methylbut-2-enyl diphosphate reductase  YP_614563  hitchhiker  0.00000130157  unclonable  0.0000000449724  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2570  CDS  NC_008044  2712248  2712865  +  618  lysine exporter protein LysE/YggA  YP_614564  hitchhiker  0.00200022  unclonable  0.0000000406824  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2571  CDS  NC_008044  2712865  2713323  +  459  hypothetical protein  YP_614565  hitchhiker  0.00137712  unclonable  0.0000000326154  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2572  CDS  NC_008044  2713320  2713919  +  600  methyltransferase type 11  YP_614566  hitchhiker  0.00406147  unclonable  0.0000000336172  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3343  CDS  NC_008043  354019  354969  -  951  periplasmic binding protein/LacI transcriptional regulator  YP_611577  unclonable  0.000000000331055  normal  0.275562  Ruegeria sp. TM1040  Bacteria 
 
 
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